Version 2.2.0 #47
Merged
Version 2.2.0 #47
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* filter_bad_cells update and fix * BAM SM tag check (counts.smk) * fix of ms norm in mosaicatcher without using ashleys module * scNOVA fix (slurm related) * arbigent: create_hdf.py fix New parameters: * ashleys_pipeline_only: target ashleys_pipeline output files to do manual selection afterwards ; liimit to the use of mosaicatcher-pipeline repo exclusively * blacklist_regions: enable/disable blacklisting of regions
* filter_bad_cells update and fix * BAM SM tag check (counts.smk) * fix of ms norm in mosaicatcher without using ashleys module * scNOVA fix (slurm related) * arbigent: create_hdf.py fix New parameters: * ashleys_pipeline_only: target ashleys_pipeline output files to do manual selection afterwards ; liimit to the use of mosaicatcher-pipeline repo exclusively * blacklist_regions: enable/disable blacklisting of regions
* filter_bad_cells update and fix * BAM SM tag check (counts.smk) * fix of ms norm in mosaicatcher without using ashleys module * scNOVA fix (slurm related) * arbigent: create_hdf.py fix New parameters: * ashleys_pipeline_only: target ashleys_pipeline output files to do manual selection afterwards ; liimit to the use of mosaicatcher-pipeline repo exclusively * blacklist_regions: enable/disable blacklisting of regions
* filter_bad_cells update and fix * BAM SM tag check (counts.smk) * fix of ms norm in mosaicatcher without using ashleys module * scNOVA fix (slurm related) * arbigent: create_hdf.py fix New parameters: * ashleys_pipeline_only: target ashleys_pipeline output files to do manual selection afterwards ; liimit to the use of mosaicatcher-pipeline repo exclusively * blacklist_regions: enable/disable blacklisting of regions
* filter_bad_cells update and fix * BAM SM tag check (counts.smk) * fix of ms norm in mosaicatcher without using ashleys module * scNOVA fix (slurm related) * arbigent: create_hdf.py fix New parameters: * ashleys_pipeline_only: target ashleys_pipeline output files to do manual selection afterwards ; liimit to the use of mosaicatcher-pipeline repo exclusively * blacklist_regions: enable/disable blacklisting of regions Dockerfile + small fixes
* filter_bad_cells update and fix * BAM SM tag check (counts.smk) * fix of ms norm in mosaicatcher without using ashleys module * scNOVA fix (slurm related) * arbigent: create_hdf.py fix New parameters: * ashleys_pipeline_only: target ashleys_pipeline output files to do manual selection afterwards ; liimit to the use of mosaicatcher-pipeline repo exclusively * blacklist_regions: enable/disable blacklisting of regions Dockerfile + small fixes Docs
* filter_bad_cells update and fix * BAM SM tag check (counts.smk) * fix of ms norm in mosaicatcher without using ashleys module * scNOVA fix (slurm related) * arbigent: create_hdf.py fix New parameters: * ashleys_pipeline_only: target ashleys_pipeline output files to do manual selection afterwards ; liimit to the use of mosaicatcher-pipeline repo exclusively * blacklist_regions: enable/disable blacklisting of regions Dockerfile + small fixes Docs
grimbough
pushed a commit
to grimbough/mosaicatcher-pipeline
that referenced
this pull request
Jun 14, 2024
weber8thomas
added a commit
to weber8thomas/mosaicatcher-pipeline
that referenced
this pull request
Jun 17, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
New parameters: