Use the segmentation label as the node id (toolbox v0.4.0) #136
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| name: tests | |
| on: | |
| push: | |
| branches: [main] | |
| tags: ["v*"] # Push events to matching v*, i.e. v1.0, v20.15.10 | |
| pull_request: {} | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test: | |
| name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest] # windows-latest, temporarily disabled until ilpy is fixed | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # note: if you need dependencies from conda, considering using | |
| # setup-miniconda: https://github.com/conda-incubator/setup-miniconda | |
| - name: Install conda dependencies | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: conda_config.yml | |
| channel-priority: true | |
| - name: Install pip dependencies | |
| shell: bash -el {0} # this is necessary to activate the conda env | |
| run: | | |
| pip install ".[testing]" | |
| - name: Test with pytest | |
| shell: bash -el {0} | |
| run: | | |
| pytest --color=yes --cov=motile-tracker --cov-report=xml --cov-report=term-missing tests | |
| - name: Coverage | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| slug: funkelab/motile-tracker |