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Fixes? #42

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Fixes? #42

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5ebbbf2
run planemo separately for each tool
bernt-matthias Jul 26, 2023
1b03c04
try to record exit code
bernt-matthias Jul 26, 2023
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22 changes: 14 additions & 8 deletions monitor.sh
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Original file line number Diff line number Diff line change
@@ -1,23 +1,29 @@
#!/bin/bash

: ${PLANEMO_TARGET:="planemo==0.74.1"}

if [ ! -f .venv ]; then
python -m venv .venv
. .venv/bin/activate
pip install -U pip
pip install PyGithub
git clone --recursive https://github.com/galaxyproject/planemo && pip install planemo/
# pip install "$PLANEMO_TARGET"
fi

planemo conda_init

sort -R $1 | while read repository
exit_code="0"
sort -R "$1" | while read repository
do
repo_dir=$(basename "$repository")
git clone --depth=1 "$repository" "$repo_dir"
planemo container_register --force_push --recursive "$repo_dir"
rm -rf "$repo_dir"
repo_dir=$(basename "$repository")
git clone --depth=1 "$repository" "$repo_dir"
cd "$repo_dir"
planemo ci_find_repos --exclude packages --exclude deprecated --exclude_from .tt_skip --output repository_list.txt
while read tool_dir
do
planemo container_register --force_push --recursive "$tool_dir"
exit_code=$(( "$exit_code" | "$?" ))
done < repository_list.txt
cd -
rm -rf "$repo_dir"
done

exit $exit_code