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407 Open 796 Closed
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Issues list

Bug: snpEff 5.2+galaxy0 will not execute with a snpEff_build_gb 5.2+galaxy0 database
#6571 opened Nov 18, 2024 by jennaj
3
Flye output assembly_gfa in format gfa not gfa1
#6561 opened Nov 14, 2024 by AnnaSyme
4
fastp latest version sets read output types to "auto" bug
#6560 opened Nov 14, 2024 by AnnaSyme
1
is there a plan to upgrade r941_prom_hac_g360+g422 model to any of latest model soon?
#6547 opened Nov 11, 2024 by mthang
5
bcftools_consensus has duplicate mask options
#6546 opened Nov 10, 2024 by pvanheus
Request for clusterprofiler update
#6535 opened Nov 5, 2024 by nilchia
1
samtools_bam_to_cram does not store genome deltas
#6523 opened Nov 5, 2024 by alpapan
14
Updating RepeatMasker to 4.1.7.1
#6502 opened Oct 31, 2024 by SaimMomin12
Toolshed category typo
#6501 opened Oct 31, 2024 by nomadscientist
Goseq with custom gene-go-category term inputs = bad scientific outputs
#6500 opened Oct 30, 2024 by jennaj
hicBuildMatrix cannot take space-separated list for Sequence of the restriction site or Dangling sequence
#6505 opened Oct 30, 2024 by bskubi
1
8
BBDuk: fails on auto-uncompressed fastq with spaces in filenames.
#6495 opened Oct 28, 2024 by hexylena
1
[meta] updating old tools / python version pinning by default
#6488 opened Oct 25, 2024 by hexylena
2
Funannotate data manager links to BUSCOs are out of date
#6478 opened Oct 22, 2024 by martindemko
add fastplong tool request
#6469 opened Oct 20, 2024 by bgruening
1
reshape2: cast/melt require en_US.UTF-8, other assorted issues.
#6467 opened Oct 18, 2024 by hexylena
1
add FDSTools tool request
#6460 opened Oct 16, 2024 by bgruening
Request: Consider including additional command line parameters on BBduk wrapped tool form
#6448 opened Oct 10, 2024 by jennaj
RAxML issue
#6447 opened Oct 10, 2024 by Hymenium
Tool update: featureCounts
#6445 opened Oct 10, 2024 by teresa-m
3
Tool request: SYRI
#6444 opened Oct 10, 2024 by microfuge
add datavzrd
#6442 opened Oct 9, 2024 by bgruening
2
IUC tool or not?
#6388 opened Oct 1, 2024 by nomadscientist
6
Autoupdate errors
#6385 opened Sep 30, 2024 by gxydevbot
5
Autoupdate errors
#6382 opened Sep 30, 2024 by gxydevbot
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