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bgruening authored Sep 29, 2024
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- "How to follow a Marine Omics study"
- "How to read a RO-Crate ?"
objectives:
- "Understand RO-Crate in a earth-system context"
- "Understand RO-Crate in an earth-system context"
time_estimation: 1H
tags:
- earth-system
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# Workflow context


The workflow used as an example here goes from :
- First produce a protein fasta file from a nucleotide fasta file using Prodigal (it is a tool that predicts protein-coding genes from DNA sequences).
- First, produce a protein FASTA file from a nucleotide FASTA file using Prodigal (a tool that predicts protein-coding genes from DNA sequences).
- Then, use InterProscan to create a tabular. Interproscan is a batch tool to query the InterPro database. It helps identify and predict the functions of proteins by comparing them to known databases.
- Finally, discover SanntiS both to build genbank and especially to detect and annotate biosynthetic gene clusters (BGCs).
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![Dates of running the workflow and creation of the RO-Crate](./images/rocrate5.png)
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### Datas
### Data

![Data uploaded for the workflow and produced by it](./images/rocrate6.png)
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![Details on the different files in the RO-Crate and end of the ro-crate-metadata.json](./images/rocrate13.png)
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### Thank you !
### Thank you!

Try to do the same on your own workflow !
Try to do the same on your workflow!



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