update GitHub action

.Rbuildignore

@@ -25,3 +25,4 @@
 ^less-dependency.Rmd$
 ^docs$
 ^roadmap\.md$
+^pkgdown$

.github/workflows/pkgdown.yaml

@@ -1,60 +1,48 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches:
-      - main
-      - master
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+  release:
+    types: [published]
+  workflow_dispatch:
 
 name: pkgdown
 
 jobs:
   pkgdown:
     runs-on: ubuntu-latest
+    # Only restrict concurrency for non-PR jobs
+    concurrency:
+      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    permissions:
+      contents: write
     steps:
-      - uses: actions/checkout@v2
-
-      - uses: r-lib/actions/setup-r@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
-      - name: Query dependencies
-        run: |
-          install.packages('remotes')
-          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
-          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
-        shell: Rscript {0}
-
-      - name: Restore R package cache
-        uses: actions/cache@v2
+      - uses: r-lib/actions/setup-r@v2
         with:
-          path: ${{ env.R_LIBS_USER }}
-          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+          use-public-rspm: true
 
-      - name: Install package dependencies
-        run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev libharfbuzz-dev libfribidi-dev
-
-      - name: Install dependencies
-        run: |
-          remotes::install_deps(dependencies = TRUE)
-          install.packages("badger")
-          install.packages('plyr')
-          install.packages("pkgdown")
-        shell: Rscript {0}
-
-      - name: Install package
-        run: R CMD INSTALL .
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
 
-      - name: Codecov analysis
-        run: |
-          install.packages("covr")
-          library("covr")
-          codecov()
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
         shell: Rscript {0}
 
-      - name: Deploy package
-        run: |
-          git config --local user.email "[email protected]"
-          git config --local user.name "GitHub Actions"
-          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)'
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/[email protected]
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

DESCRIPTION

@@ -28,7 +28,7 @@ Imports:
     aplot,
     forcats,
     tidyr
-URL: https://github.com/gaospecial/ggVennDiagram
+URL: https://github.com/gaospecial/ggVennDiagram, https://gaospecial.github.io/ggVennDiagram/
 License: GPL-3
 Encoding: UTF-8
 RoxygenNote: 7.2.3

_pkgdown.yml

@@ -1,47 +1,45 @@
+url: https://gaospecial.github.io/ggVennDiagram/
 home:
-    strip_header: true
-
+  strip_header: yes
 reference:
-    - title: Main wrapers
-      desc: Main functions of 'ggVennDiagram'
-      contents:
-      - ggVennDiagram
-      - plot_venn
-      - upset_plot
-
-    - title: Shape viewer
-      desc: methods used to get and view shape data
-      contents:
-      - plot_shapes
-      - plot_shape_edge
-      - get_shapes
-      - get_shape_data
-      - get_shape_by_id
-
-    - title: VennPlotData object and methods
-      desc: a S3 class to store Venn sets and shape data
-      - process_data
-      - plotData_add_venn
-      - VennPlotData
-      - venn_plot_data
-      - print
-
-    - title: Venn object and methods
-      desc: a S4 class to store Venn sets and calculate subsets
-      contents:
-      - 'Venn-class'
-      - venn_region
-      - venn_regionedge
-      - venn_regionlabel
-      - venn_set
-      - venn_setedge
-      - venn_setlabel
+- title: Main wrapers
+  desc: Main functions of 'ggVennDiagram'
+  contents:
+  - ggVennDiagram
+  - plot_venn
+  - upset_plot
+- title: Shape viewer
+  desc: methods used to get and view shape data
+  contents:
+  - plot_shapes
+  - plot_shape_edge
+  - get_shapes
+  - get_shape_data
+  - get_shape_by_id
+- title: VennPlotData object and methods
+  desc: a S3 class to store Venn sets and shape data
+  contents:
+  - process_data
+  - plotData_add_venn
+  - VennPlotData
+  - venn_plot_data
+  - print
+- title: Venn object and methods
+  desc: a S4 class to store Venn sets and calculate subsets
+  contents:
+  - Venn-class
+  - venn_region
+  - venn_regionedge
+  - venn_regionlabel
+  - venn_set
+  - venn_setedge
+  - venn_setlabel
+- title: subset processing
+  desc: helper functions to calculate subset members
+  contents:
+  - combinations
+  - all_identical
+  - discern_overlap
+  - overlap
+  - unite
 
-    - title: subset processing
-      desc: helper functions to calculate subset members
-      contents:
-      - combinations
-      - all_identical
-      - discern_overlap
-      - overlap
-      - unite