Skip to content
This repository has been archived by the owner on Jan 5, 2021. It is now read-only.

1.0.0
Compare
Choose a tag to compare
@bshifaw bshifaw released this 26 Jan 01:09
· 6 commits to master since this release
1.0.0
cd1060b
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Initial addition of workflows used for germline processing in whole genome sequence data. This repo replaces the five-dollar-genome-analysis-pipeline repository. The workflows are the same with additional updates:

  • Modified the WholeGenomeGermlineSingleSample pipeline to use an up-to-date set of contamination resource files for VerifyBamId.
  • Removed unused import statements from WholeGenomeGermlineSingleSample.wdl
  • Adjusted memory parameters to avoid Google's new e2 instances because there are not enough machines to satisfy our production use case.
  • This is a major update to the WholeGenomeGermlineSingleSample pipeline. We are jumping forward several versions of Picard, from version 2.16.0 to 2.20.4
Assets 2
Loading