CNEr

Conserved Noncoding Elements (CNEs) Identification and Visualisation

Installation of the stable version of CNEr from Bioconductor

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("CNEr")

Installation of the development version of CNEr from github

Prerequsite:

• Mac: Install "Command Line Tools" via gcc on terminal
• Linux: Install a compiler and various development libraries (details vary across different flavors of Linux).
• Windows: Install Rtools.

devtools::install_github("ge11232002/CNEr")

Vignette

Latest vignette is available at http://rpubs.com/yang2/CNEr3

Citation:

G. Tan, D. Polychronopoulos, B.Lenhard: 
CNEr: A toolkit for exploring extreme noncoding conservation.
PLoS Comput Biol. 2019 Aug 26;15(8):e1006940. doi: 10.1371/journal.pcbi.1006940. eCollection 2019 Aug.