Merge branch 'master' into balhoff-patch-1

geneontology · Mar 6, 2024 · 8e440c9 · 8e440c9
2 parents 34f153a + f66b4bb
commit 8e440c9
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Showing 12 changed files with 24 additions and 24 deletions.
diff --git a/...test/resources/validation/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl b/...test/resources/validation/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl
@@ -128,7 +128,7 @@
 
 ###  http://model.geneontology.org/5d251e6800000000/5d251e6800000003
 <http://model.geneontology.org/5d251e6800000000/5d251e6800000003> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "434.9801025390625"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/date> "2019-07-11"^^xsd:string ;

diff --git a/minerva-core/src/test/resources/validation/should_pass/Test001-missing_enabled_by.ttl b/minerva-core/src/test/resources/validation/should_pass/Test001-missing_enabled_by.ttl
@@ -204,7 +204,7 @@
 
 ###  http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050
 <http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "148.75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "55"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/...ources/validation/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl b/...ources/validation/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl
@@ -237,7 +237,7 @@
 
 ###  http://model.geneontology.org/5d27d1cf00000407/5d27d1cf00000418
 <http://model.geneontology.org/5d27d1cf00000407/5d27d1cf00000418> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/...core/src/test/resources/validation/should_pass/Test019-happens_during_BiologicalPhase.ttl b/...core/src/test/resources/validation/should_pass/Test019-happens_during_BiologicalPhase.ttl
@@ -237,7 +237,7 @@
 
 ###  http://model.geneontology.org/5d27d1cf00000408/5d27d1cf00000418
 <http://model.geneontology.org/5d27d1cf00000408/5d27d1cf00000418> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/...a-core/src/test/resources/validation/should_pass/Test026-has_output_2_MolecularEntity.ttl b/...a-core/src/test/resources/validation/should_pass/Test026-has_output_2_MolecularEntity.ttl
@@ -240,7 +240,7 @@
 
 ###  http://model.geneontology.org/5d27d1cf00000588/5d27d1cf00000600
 <http://model.geneontology.org/5d27d1cf00000588/5d27d1cf00000600> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/...va-core/src/test/resources/validation/should_pass/Test027-has_input_2_MolecularEntity.ttl b/...va-core/src/test/resources/validation/should_pass/Test027-has_input_2_MolecularEntity.ttl
@@ -311,7 +311,7 @@
 
 ###  http://model.geneontology.org/5d27d1cf00000607/5d27d1cf00000625
 <http://model.geneontology.org/5d27d1cf00000607/5d27d1cf00000625> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/...src/test/resources/models/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl b/...src/test/resources/models/should_pass/Test000-Correct_and_complete_ActivityUnit_model.ttl
@@ -170,8 +170,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -268,7 +268,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d251e6800000000/5d251e6800000003
 <http://model.geneontology.org/5d251e6800000000/5d251e6800000003> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "434.9801025390625"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/date> "2019-07-11"^^xsd:string ;

diff --git a/minerva-server/src/test/resources/models/should_pass/Test001-missing_enabled_by.ttl b/minerva-server/src/test/resources/models/should_pass/Test001-missing_enabled_by.ttl
@@ -168,8 +168,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -340,7 +340,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050
 <http://model.geneontology.org/5d27d1cf00000038/5d27d1cf00000050> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "148.75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "55"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/.../resources/models/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl b/.../resources/models/should_pass/Test018-directly_positively_regulates_MolecularFunction.ttl
@@ -185,8 +185,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -389,7 +389,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000407/5d27d1cf00000418
 <http://model.geneontology.org/5d27d1cf00000407/5d27d1cf00000418> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/...a-server/src/test/resources/models/should_pass/Test019-happens_during_BiologicalPhase.ttl b/...a-server/src/test/resources/models/should_pass/Test019-happens_during_BiologicalPhase.ttl
@@ -185,8 +185,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -389,7 +389,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000408/5d27d1cf00000418
 <http://model.geneontology.org/5d27d1cf00000408/5d27d1cf00000418> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/...rva-server/src/test/resources/models/should_pass/Test026-has_output_2_MolecularEntity.ttl b/...rva-server/src/test/resources/models/should_pass/Test026-has_output_2_MolecularEntity.ttl
@@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -380,7 +380,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000588/5d27d1cf00000600
 <http://model.geneontology.org/5d27d1cf00000588/5d27d1cf00000600> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,

diff --git a/minerva-server/src/test/resources/models/should_pass/Test027-has_input_2_MolecularEntity.ttl b/minerva-server/src/test/resources/models/should_pass/Test027-has_input_2_MolecularEntity.ttl
@@ -177,8 +177,8 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 <http://purl.obolibrary.org/obo/GO_0005634> rdf:type owl:Class .
 
 
-###  http://purl.obolibrary.org/obo/GO_0006306
-<http://purl.obolibrary.org/obo/GO_0006306> rdf:type owl:Class .
+###  http://purl.obolibrary.org/obo/GO_0043414
+<http://purl.obolibrary.org/obo/GO_0043414> rdf:type owl:Class .
 
 
 ###  http://purl.obolibrary.org/obo/GO_0009008
@@ -455,7 +455,7 @@ owl:versionInfo rdf:type owl:AnnotationProperty .
 
 ###  http://model.geneontology.org/5d27d1cf00000607/5d27d1cf00000625
 <http://model.geneontology.org/5d27d1cf00000607/5d27d1cf00000625> rdf:type owl:NamedIndividual ,
-                                                                           <http://purl.obolibrary.org/obo/GO_0006306> ;
+                                                                           <http://purl.obolibrary.org/obo/GO_0043414> ;
                                                                   <http://geneontology.org/lego/hint/layout/x> "75"^^xsd:string ;
                                                                   <http://geneontology.org/lego/hint/layout/y> "75"^^xsd:string ;
                                                                   <http://purl.org/dc/elements/1.1/contributor> "http://orcid.org/0000-0002-1706-4196"^^xsd:string ,