Prepare release v.2.1.13

genepi · Jun 6, 2024 · 2c37109 · 2c37109
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diff --git a/README.md b/README.md
@@ -8,7 +8,10 @@ mtDNA-Server 2 is a Nextflow DSL2 pipeline to accurately detect heteroplasmic an
 ![image](docs/images/report.png)
 
 ## Version History
-Release [v2.1.11](../../releases/tag/v2.1.12) - Install Haplogrep3 tree directly.
+
+Release [v2.1.13](../../releases/tag/v2.1.13) - Update to latest Haplogrep3 
+
+Release [v2.1.12](../../releases/tag/v2.1.12) - Install Haplogrep3 tree directly.
 
 Release [v2.1.11](../../releases/tag/v2.1.11) - Improve QC command, update to latest mutserve v2.0.1.
 
@@ -37,12 +40,12 @@ To run mtDNA-Server 2 via Nextflow, please execute the following steps.
 
 2. Run the pipeline on our test dataset and select either Docker, Singluarity or Slurm. 
 ```
-nextflow run genepi/mtdna-server-2 -r v2.1.12 -profile test,<docker,singularity,slurm>
+nextflow run genepi/mtdna-server-2 -r v2.1.13 -profile test,<docker,singularity,slurm>
 ```
 ### Run Pipeline on own data
 To run mtDNA-Server 2 on your own data, create a [config file](tests/test_mitohpc_fusion.config) and run the following command:
 ```
-nextflow run genepi/mtdna-server-2 -r v2.1.12 -c <your-config-file> -profile docker
+nextflow run genepi/mtdna-server-2 -r v2.1.13 -c <your-config-file> -profile docker
 ```
 
 ### Parameters

diff --git a/cloudgene.yaml b/cloudgene.yaml
@@ -2,7 +2,7 @@ id: mtdna-server-2
 name: mtDNA-Server 2 - Mitochondrial Variant Calling 
 description: "A free web service to analyze your mtDNA NGS data. The service accepts data in BAM format aligned against the rCRS reference and returns homoplasmic and heteroplasmic variants in return. <br>Feel free to <a href=\"https://github.com/genepi/mtdna-server-2/?tab=readme-ov-file#contact\"><u>contact us</u></a> if you have issues running the pipeline.<br><br>No dataset at hand? No problem, download and extract our example dataset: <a href=\"https://mitoverse.i-med.ac.at/downloads/6-samples.zip\" class=\"btn btn-sm btn-secondary\" style=\"color:#ffffff !important\"><i class=\"fa fa-file\"></i> 6-samples.zip</a><br><br>"
 
-version: v2.1.11
+version: v2.1.13
 website: https://mitoverse.readthedocs.io/
 category:
 

diff --git a/nextflow.config b/nextflow.config
@@ -1,6 +1,6 @@
 manifest {
     name                                  = 'mtDNA-Server 2'
-    version                               = 'v2.1.12'
+    version                               = 'v2.1.13'
     description                           = 'mtDNA Variant Calling'
     author                                = 'Sebastian Schönherr, Hansi Weissensteiner, Lukas Forer'
     homePage                              = 'https://github.com/genepi/mtdna-server-2'
@@ -45,7 +45,7 @@ params {
 profiles {
     debug { process.beforeScript          = 'echo $HOSTNAME' }
 
-    process.container                 = 'quay.io/genepi/mtdna-server-2:v2.1.12'
+    process.container                 = 'quay.io/genepi/mtdna-server-2:v2.1.13'
     docker.enabled                    = true
     docker.userEmulation              = true
     singularity.enabled               = false