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Prepeare releave v0.4.9
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seppinho committed Feb 21, 2024
1 parent 43abbb9 commit 501969e
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -13,13 +13,13 @@ The pipeline has been applied to the **KIV-2 VNTR** of the **LPA gene** (using a
2) Run the pipeline on a test dataset

```
nextflow run genepi/vntr-calling-nf -r v0.4.8 -profile test,<docker,singularity>
nextflow run genepi/vntr-calling-nf -r v0.4.9 -profile test,<docker,singularity>
```

3) Run the pipeline on your data

```
nextflow run genepi/vntr-calling-nf -c <nextflow.config> -r v0.4.8 -profile <docker,singularity>
nextflow run genepi/vntr-calling-nf -c <nextflow.config> -r v0.4.9 -profile <docker,singularity>
```

## Parameters
Expand Down Expand Up @@ -84,7 +84,7 @@ Final VNTR data are available within this repository [here](paper_data/vntrs).
## Development

```
docker build -t genepi/vntr-caller-nf . # don't ingore the dot here
docker build -t genepi/vntr-calling-nf . # don't ingore the dot here
nextflow run main.nf -profile test,development
```

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4 changes: 2 additions & 2 deletions nextflow.config
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Expand Up @@ -2,7 +2,7 @@ docker.enabled = true

manifest {
name = 'vntr-calling-nf'
version = '0.4.8'
version = '0.4.9'
description = 'Nextflow pipeline to resolve variants in VNTRS from sequencing data'
author = 'Sebastian Schönherr'
homePage = 'https://github.com/genepi/vntr-calling-nf'
Expand Down Expand Up @@ -32,7 +32,7 @@ params {

}

process.container = 'quay.io/genepi/vntr-calling-nf:v0.4.8'
process.container = 'quay.io/genepi/vntr-calling-nf:v0.4.9'


// Load base.config by default for all pipelines
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