Amber

Type of change	Change
Change	The upload command, HCPHandler.upload_file and HCPHandler.upload_file was updated with a object path parameter
Addition	NGPIris.hcp.exceptions.ObjectAlreadyExist exception was added
Change	HCPHandler.list_objects can now list more than 1000 objects
Change	HCPHandler.list_objects now returns a generator instead of a list
Change	Pagination was added to list objects command
Addition	HCPHandler.create_bucket was added
Change	Download command can now download folders

Indigo

Type of change	Change
Change	The iris command delete is replaced by delete-folder and delete-object
Addition	The iris command list-buckets was added
Addition	The iris command list-objects was added
Change	The iris command search is replaced by simple-search
Removal	The iris command utils was removed

Type of change	Change
Addition	The new iris_generate_credentials_file command was added
Change	The structure of the credentials file was altered

Type of change	Change
Change	The class name HCPManager was changed to HCPHandler with its new set of parameters
Change	The class class methods HCPManager.set_bucket and HCPManager.attach_bucket was replaced by HCPHandler.mount_bucket
Removal	HCPManager.delete_key was removed
Addition	HCPHandler.get_response was added
Addition	HCPHandler.list_objects was added
Addition	HCPHandler.object_exists was added
Addition	HCPHandler.upload_folder was added
Addition	HCPHandler.delete_objects was added
Addition	HCPHandler.delete_folder was added
Addition	HCPHandler.search_objects_in_bucket was added
Addition	HCPHandler.get_object_acl was added
Addition	HCPHandler.get_bucket_acl was added
Addition	HCPHandler.modify_single_object_acl was added
Addition	HCPHandler.modify_single_bucket_acl was added
Addition	HCPHandler.modify_object_acl was added
Addition	HCPHandler.modify_bucket_acl was added
Addition	A new module for HCP statistics called statistics.py was added

Type of change	Change
Change	The class name HCIManager was changed to HCIHandler with its new set of parameters
Removal	HCIManager.get_password was removed
Removal	HCIManager.create_template was removed
Removal	HCIManager.generate_token was removed
Removal	HCIManager.query was removed
Removal	HCIManager.pretty_query was removed
Removal	HCIManager.get_index was removed
Addition	HCIHandler.request_token was added
Addition	HCIHandler.list_index_names was added
Addition	HCIHandler.look_up_index was added
Addition	HCIHandler.raw_query was added
Addition	HCIHandler.raw_query_from_JSON was added

Ameliorated Actions

Added recursive upload
Added upload via file list commands to utils subcommand
Refactored hcp/hci code
Improved README use cases
Updated target machine to new host
Moved user irrelevant warnings to debug level
Refactored -a to optional -q flag

Tiny Tidbit

Features

• Added force flag to upload command/function
• Added delete by key function

Structure

• Compartmentalized the docs
• Rewrote all CLI examples
• Clarified some CLI helptext

Bugs

• Transfer speed will no longer show 0.0 or negative results
• Fixed some minor bugs related to uploading

Replaced Refactoring

Features

• Added list-buckets util command
• Added test-connection util command
• Added full string search functionality

Structures

• Moved out most code from the CLI to interact file
• Moved other things to preproc file

Bugs

• Removed redundant test

Superior Searchability

Features

• Added optional NGPi password to credentials
• Rewrote download and search to have multiple search modes
• Readded search mode NGPi
• Readded search mode NGPi-legacy
• Redefined search mode NGPr
• Redefined search mode None
• Reconfigured HCIManager to work with current NGPi
• Added function indices

Structure

• Rewrote HCI file into HCIManager class
• Added main to all CLI file
• Integrated all functionality of hci_functions to either functions, or misc set utils
• Reordered Readme

Fixes

• When download finds multiple files it wont crash
• Downloading with a target folder structure creates said structure
• Fixes terminal issue when running iris on the Nodes of GU
• Propagated urllib3 fix

Ballistic bugfixes

Just a bunch of bugfixes and refactors

Refined the Rendition

Functions

• Refined tagmap / metadata file generator code
• Callback function now can now be silenced using boolean
• Pytests now use randomized file names to avoid testing conflicts
• Expanded NGPr file searching command, with restriction categories and wildcards

Fixes

• Output stats have been moved to the exit function of ProgressPercentage
• Fixed bucketname linking not working as intended
• If zero files are uploaded due to options, an error is caught and displayed
• If file size is too big for successful transfer, an error is caught and displayed
• Fix to stdout to better support cronjobs

Documentation

• Revised README information on usage
• Updated names to refer to NGP(c/i/r)

Reaffirming the Resolution

Functions

• HCP class differentiation between bucket (object) and bucket (name)
• Trim_text function is now Win32 compatible
• Average transfer rate now listed
• Streamed log is defaulting to INFO level
• Non fastq files can now forcibly be uploaded
• Metadata file is now optional

Fixes

• Fastq files can now contain N
• Fixed an upload function bug
• Fixed a bunch of f-string bugs
• Transfer speed is now calculated and displayed

Documentation

• Streamed log is defaulting to INFO level
• Cleaned up command logs
• CLI changed so that each command has an argument
• README now refers to iris command instead of hcpi
• README examples clarified
• Added additional help lines to CLI

Improvised the Identity

• Package name is now NGPIris to reflect the policy change in naming
• Backrolled urlllib due to boto conflict
• Connection auto-test can now be cancelled on object creation
• Generalised bucket invocation for tests
• Minor code refactoring