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Update README.md

Update README.md #145

Workflow file for this run

name: CI test
# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
on: ["pull_request", "push"]
env:
NXF_ANSI_LOG: false
CAPSULE_LOG: none
jobs:
test:
name: Run workflow tests
runs-on: ubuntu-latest
strategy:
matrix:
# Nextflow versions
include:
# Test pipeline minimum Nextflow version
- NXF_VER: '21.10.3'
NXF_EDGE: ''
# Test latest edge release of Nextflow
- NXF_VER: ''
NXF_EDGE: '1'
steps:
- name: Check out pipeline code
uses: actions/checkout@v2
- name: Install Nextflow
env:
NXF_VER: ${{ matrix.NXF_VER }}
# Uncomment only if the edge release is more recent than the latest stable release
# See https://github.com/nextflow-io/nextflow/issues/2467
# NXF_EDGE: ${{ matrix.NXF_EDGE }}
run: |
wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/
- name: Run pipeline with test data
run: |
nextflow main.nf -profile test,docker --samplesheet .github/samplesheet_test.csv --output testing/