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Update README.md #145
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name: CI test | |
# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors | |
on: ["pull_request", "push"] | |
env: | |
NXF_ANSI_LOG: false | |
CAPSULE_LOG: none | |
jobs: | |
test: | |
name: Run workflow tests | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
# Nextflow versions | |
include: | |
# Test pipeline minimum Nextflow version | |
- NXF_VER: '21.10.3' | |
NXF_EDGE: '' | |
# Test latest edge release of Nextflow | |
- NXF_VER: '' | |
NXF_EDGE: '1' | |
steps: | |
- name: Check out pipeline code | |
uses: actions/checkout@v2 | |
- name: Install Nextflow | |
env: | |
NXF_VER: ${{ matrix.NXF_VER }} | |
# Uncomment only if the edge release is more recent than the latest stable release | |
# See https://github.com/nextflow-io/nextflow/issues/2467 | |
# NXF_EDGE: ${{ matrix.NXF_EDGE }} | |
run: | | |
wget -qO- get.nextflow.io | bash | |
sudo mv nextflow /usr/local/bin/ | |
- name: Run pipeline with test data | |
run: | | |
nextflow main.nf -profile test,docker --samplesheet .github/samplesheet_test.csv --output testing/ |