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use nf-core configs to load hasta #41

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use nf-core configs to load hasta #41

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8a0b174
use nf-core configs to load hasta
projectoriented Apr 27, 2022
4ca594e
Merge branch 'main' into add_hasta_profile
projectoriented Apr 27, 2022
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10 changes: 10 additions & 0 deletions nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,9 @@ params {

platform='ILLUMINA'

// Utilize nf-core custom profiles
custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/master"

// Star reference directory path
star_index="${reference_dir}/grch38_homo_sapiens_-gencode_pri-.fasta_star_genome_dir/"

Expand Down Expand Up @@ -49,6 +52,13 @@ process.shell = ['/bin/bash', '-euo', 'pipefail']
// Load modules.config for DSL2 module specific options
includeConfig 'conf/modules.config'

// Load nf-core custom profiles from different Institutions
try {
includeConfig "${params.custom_config_base}/nfcore_custom.config"
} catch (Exception e) {
System.err.println("WARNING: Could not load nf-core/config profiles: ${params.custom_config_base}/nfcore_custom.config")
}

profiles {
docker {
docker.enabled = true
Expand Down