fix: added blacklist files to reference config

genomic-medicine-sweden · May 2, 2024 · 3450166 · 3450166
1 parent a4902e3
commit 3450166
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diff --git a/config/references/design_files.hg19.yaml b/config/references/design_files.hg19.yaml
@@ -48,6 +48,11 @@
      url: https://github.com/genomic-medicine-sweden/Twist_Solid_pipeline_files/raw/v0.6.0/cnv/cnv_amplification_genes_240307.tsv
 
  call_small_cnv_deletions:
+   blacklist:
+     checksum: 019763e1b79682a56074a3f53a73d149
+     path: GMS560/cnv/small_deletions_caller_blacklist.tsv
+     type: file
+     url: https://github.com/genomic-medicine-sweden/Twist_Solid_pipeline_files/raw/v0.7.0/cnv/small_deletions_caller_blacklist.tsv 
    regions_file:
      checksum: e044cf88e5e50e68a3a797be5720e6c0
      path: GMS560/cnv/cnv_deletion_genes.tsv

diff --git a/config/references/design_files.hg38.yaml b/config/references/design_files.hg38.yaml
@@ -48,6 +48,11 @@
      url: https://github.com/genomic-medicine-sweden/Twist_Solid_pipeline_files/raw/v0.6.0/cnv/cnv_amplification_genes_hg38_240307.tsv
 
  call_small_cnv_deletions:
+   blacklist:
+     checksum: 9f57eec94bee9b4edf4bba409c7b7b4c
+     path: GMS560/cnv/small_deletions_caller_blacklist_hg38.tsv
+     type: file
+     url: https://github.com/genomic-medicine-sweden/Twist_Solid_pipeline_files/raw/v0.7.0/cnv/small_deletions_caller_blacklist_hg38.tsv 
    regions_file:
      checksum: 92510485ce32e9ef64697121aae4122c
      path: GMS560/cnv/cnv_deletion_genes_hg38.tsv