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Merge pull request #472 from genomic-medicine-sweden/update_cnv_check…
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…sums

test: Update cnv checksums
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@Smeds
Smeds authored Jun 10, 2024
2 parents 5beeefa + 5a168e8 commit 5df40ec
Showing 1 changed file with 12 additions and 11 deletions.
23 changes: 12 additions & 11 deletions .tests/jenkins/test_input_develop.tsv
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Expand Up @@ -5,15 +5,15 @@ results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.pathology.s
results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.purecn.scarhrd_cnvkit_score.txt 55145eab2e60e588c66b233cf1479287
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.amplifications.tsv f397f92f69100d1f20ca65ffac830dd0
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.deletions.tsv e441b862e6d6d573d18fe40f1eaa7103
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.manta_tumorSV.vcf.gz 1c4f0a2b346d1355dc76fcd126222729
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_all.cnv_report.tsv 56d83a956014bee636190f90552a357b
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_validated.cnv_report.tsv 3e76608f00bd7f861a29d80e9b0194de
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_all.cnv_report.tsv 74be2ae4ca682618ff57bf099ca89b57
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results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_all.cnv_report.tsv 74be2ae4ca682618ff57bf099ca89b57
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_validated.cnv_report.tsv 9e423621153bb987efc66bf0cc25623d
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.svdb_query.vcf df493dbcc1e174b09c90696ca61d69a5
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.manta_tumorSV.vcf.gz 05c5aead798d0a04dc762657fc377f70
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_all.cnv_report.tsv 29beb70a92981779b52d26f5b3a38434
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_validated.cnv_report.tsv 1bb1a34245f59a884358fb21ff2a5f69
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_all.cnv_report.tsv 1115cf9989f5ce9725bf69f2e397fde9
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.svdb_query.vcf 346fa589b5cbddbcbb49f17bad82a2c1
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.svdb_query.vcf a51174678cfd5b11bf91f21a5c475e6f
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_all.cnv_report.tsv 1115cf9989f5ce9725bf69f2e397fde9
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_validated.cnv_report.tsv 227717b4bc1de967c6ebeff9e240a274
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.svdb_query.vcf bf08dd41108d0b4fe2277099be90a293
results/dna/VAL2022-2-5M_T/additional_files/fusion/VAL2022-2-5M_T.fuseq_wes.unfiltered.results.csv 8ecac127fc74039d5b9eb36e522ac4a5
results/dna/VAL2022-2-5M_T/additional_files/qc/VAL2022-2-5M_T.alignment_summary_metrics.txt fa88f8adc1d6146cf399c6d17a37d098
results/dna/VAL2022-2-5M_T/additional_files/qc/VAL2022-2-5M_T.contamination.table a4ee6cd2e1cfe029229f5b218ac318e9
Expand All @@ -29,9 +29,10 @@ results/dna/VAL2022-2-5M_T/additional_files/vcf/vardict_VAL2022-2-5M_T.vcf.gz 22
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results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.TMB.txt e20d98b80deb3ad74605c0439abda1f2
results/dna/VAL2022-2-5M_T/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_validated.cnv_report.tsv 9e423621153bb987efc66bf0cc25623d
results/dna/VAL2022-2-5M_T/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_validated.cnv_report.tsv 227717b4bc1de967c6ebeff9e240a274
results/dna/VAL2022-2-5M_T/fusion/VAL2022-2-5M_T.fuseq_wes.report.csv ada3432e93dd1ff64f9254d8c83c91c5
results/dna/VAL2022-2-5M_T/qc/VAL2022-2-5M_T.coverage_and_mutations.tsv 62666e179f8e43450e4dd65a75928e34
results/dna/VAL2022-2-5M_T/qc/VAL2022-2-5M_T.coverage_and_mutations.tsv 8921f53aa4902a009fb34b6e6db2a8da
results/dna/VAL2022-2-5M_T/qc/VAL2022-2-5M_T.coverage_and_mutations.ENC.tsv 5331bcd5647fac6ee1424b07b3a81651
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results/dna/VAL2022-2-5M_T/vcf/VAL2022-2-5M_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf 7c62b3abce55f9eacce567211dbb0a1b
results/rna/SeraSeq-NTRK-FFPE-2-5M_R/additional_files/fusion/SeraSeq-NTRK-FFPE-2-5M_R.arriba.fusions.tsv eedffe64014818557f8fd9ea2c21fa7c
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