Merge pull request #498 from genomic-medicine-sweden/jenkins_update

test: update jenkins test files for develop

.tests/jenkins/test_input_develop.tsv

@@ -1,19 +1,19 @@
 file	checksum
 bam_dna/VAL2022-2-5M_T.bam	9d1a23338e67ab11cf43b6490974b4f7
 bam_rna/SeraSeq-NTRK-FFPE-2-5M_R.star_fusion.bam	7be7432fe3d040f81bbd240452f74636
-results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.pathology.scarhrd_cnvkit_score.txt	97b305e67a91519dd3c58e800b0d0eac
-results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.purecn.scarhrd_cnvkit_score.txt	0ddb2498f1bb1f563cc8353c5446571c
+results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.pathology.scarhrd_cnvkit_score.txt	5a4de29544e52cd12ef51ac987fbe5d3
+results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.purecn.scarhrd_cnvkit_score.txt	9aea121dc7cde26b10b46a8d647167fd
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.amplifications.tsv	f397f92f69100d1f20ca65ffac830dd0
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.deletions.tsv	e441b862e6d6d573d18fe40f1eaa7103
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.manta_tumorSV.vcf.gz	1c4f0a2b346d1355dc76fcd126222729
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_all.cnv_report.tsv	aba15a5adbe875fe2c20af10ce0ede84
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_validated.cnv_report.tsv	26f9c02ca97ee3d5c6f2e017d2be55a2
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_all.cnv_report.tsv	0354da3fa47fbabba8335dd514fc2a62
-results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.svdb_query.vcf	ed8d6a4b5a8d957a3ec703247b656d44
-results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.svdb_query.vcf	3ed8797f2b954c902d0375e8cb31344a
+results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.svdb_query.vcf	c6dc3b8e98e9c30ea545ab56fec68acb
+results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.svdb_query.vcf	185cefdf6c883338a20e6f15f3904558
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_all.cnv_report.tsv	0354da3fa47fbabba8335dd514fc2a62
 results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_validated.cnv_report.tsv	832afb9b369e12a7392b79dfeaaa6b1a
-results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.svdb_query.vcf	32abc0205af8f0f9f5eef45ddd31b4ab
+results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.svdb_query.vcf	c6dc3b8e98e9c30ea545ab56fec68acb
 results/dna/VAL2022-2-5M_T/additional_files/fusion/VAL2022-2-5M_T.fuseq_wes.unfiltered.results.csv  8ecac127fc74039d5b9eb36e522ac4a5
 results/dna/VAL2022-2-5M_T/additional_files/qc/VAL2022-2-5M_T.alignment_summary_metrics.txt	fa88f8adc1d6146cf399c6d17a37d098
 results/dna/VAL2022-2-5M_T/additional_files/qc/VAL2022-2-5M_T.contamination.table	a4ee6cd2e1cfe029229f5b218ac318e9
@@ -27,7 +27,7 @@ results/dna/VAL2022-2-5M_T/additional_files/vcf/VAL2022-2-5M_T.annotated.exon_on
 results/dna/VAL2022-2-5M_T/additional_files/vcf/VAL2022-2-5M_T.annotated.vcf.gz	61bc6de716210bbc7f2926b97e7d506f
 results/dna/VAL2022-2-5M_T/additional_files/vcf/vardict_VAL2022-2-5M_T.vcf.gz	22c587c4f250d6d800a5f022324da458
 results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.msisensor_pro.score.tsv	e47f1fb00f0220a20335f972e1af8d39
-results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.pathology_purecn.scarhrd_cnvkit_score.txt	0ddb2498f1bb1f563cc8353c5446571c
+results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.pathology_purecn.scarhrd_cnvkit_score.txt	9aea121dc7cde26b10b46a8d647167fd
 results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.TMB.txt	e20d98b80deb3ad74605c0439abda1f2
 results/dna/VAL2022-2-5M_T/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_validated.cnv_report.tsv	832afb9b369e12a7392b79dfeaaa6b1a
 results/dna/VAL2022-2-5M_T/fusion/VAL2022-2-5M_T.fuseq_wes.report.csv	ada3432e93dd1ff64f9254d8c83c91c5