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Merge pull request #492 from genomic-medicine-sweden/rna_new_multiqc_fix
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fix: update rna multiqc report for new version of multiqc
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monikaBrandt authored Sep 30, 2024
2 parents 684070d + 991f187 commit c108323
Showing 1 changed file with 2 additions and 10 deletions.
12 changes: 2 additions & 10 deletions config/reports/multiqc_config_rna.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -119,20 +119,13 @@ multiqc_cgs:
scale: "RdYlGn-rev"
format: "{:.1f}"
"Picard: InsertSizeMetrics":
MEDIAN_INSERT_SIZE:
summed_median:
title: "Median insert size"
description: "Median insert size from Picard"
min: 70
max: 200
scale: "RdYlGn"
format: "{:.1f}"
STANDARD_DEVIATION:
title: "Insert size s.d."
description: "Insert size standard deviation from Picard"
min: 0
max: 150
scale: "RdYlGn-rev"
format: "{:.1%}"

table_columns_placement:
"Samtools: stats":
Expand All @@ -151,6 +144,5 @@ table_columns_placement:
ZERO_CVG_TARGETS_PCT: 1020
FOLD_80_BASE_PENALTY: 1030
"Picard: InsertSizeMetrics":
MEDIAN_INSERT_SIZE: 980
STANDARD_DEVIATION: 990
summed_median: 980

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