Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

test: Update cnv checksums #472

Merged
merged 2 commits into from
Jun 10, 2024
Merged

test: Update cnv checksums #472

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
2d43eb1
test: develop cnv md5sums
jonca79 Jun 10, 2024
5a168e8
test: develop cov_and_mut md5sums
jonca79 Jun 10, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
23 changes: 12 additions & 11 deletions .tests/jenkins/test_input_develop.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,15 +5,15 @@ results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.pathology.s
results/dna/VAL2022-2-5M_T/additional_files/biomarker/VAL2022-2-5M_T.purecn.scarhrd_cnvkit_score.txt 55145eab2e60e588c66b233cf1479287
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.amplifications.tsv f397f92f69100d1f20ca65ffac830dd0
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.deletions.tsv e441b862e6d6d573d18fe40f1eaa7103
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.manta_tumorSV.vcf.gz 1c4f0a2b346d1355dc76fcd126222729
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_all.cnv_report.tsv 56d83a956014bee636190f90552a357b
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_validated.cnv_report.tsv 3e76608f00bd7f861a29d80e9b0194de
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_all.cnv_report.tsv 74be2ae4ca682618ff57bf099ca89b57
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.svdb_query.vcf 80bee8371b5f86740b20cad6dd46f7c5
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.svdb_query.vcf 0843104254a004715141cb1cce10f1c9
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_all.cnv_report.tsv 74be2ae4ca682618ff57bf099ca89b57
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_validated.cnv_report.tsv 9e423621153bb987efc66bf0cc25623d
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.svdb_query.vcf df493dbcc1e174b09c90696ca61d69a5
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.manta_tumorSV.vcf.gz 05c5aead798d0a04dc762657fc377f70
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_all.cnv_report.tsv 29beb70a92981779b52d26f5b3a38434
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.amp_all_del_validated.cnv_report.tsv 1bb1a34245f59a884358fb21ff2a5f69
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_all.cnv_report.tsv 1115cf9989f5ce9725bf69f2e397fde9
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology_purecn.svdb_query.vcf 346fa589b5cbddbcbb49f17bad82a2c1
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.pathology.svdb_query.vcf a51174678cfd5b11bf91f21a5c475e6f
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_all.cnv_report.tsv 1115cf9989f5ce9725bf69f2e397fde9
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.amp_all_del_validated.cnv_report.tsv 227717b4bc1de967c6ebeff9e240a274
results/dna/VAL2022-2-5M_T/additional_files/cnv/VAL2022-2-5M_T.purecn.svdb_query.vcf bf08dd41108d0b4fe2277099be90a293
results/dna/VAL2022-2-5M_T/additional_files/fusion/VAL2022-2-5M_T.fuseq_wes.unfiltered.results.csv 8ecac127fc74039d5b9eb36e522ac4a5
results/dna/VAL2022-2-5M_T/additional_files/qc/VAL2022-2-5M_T.alignment_summary_metrics.txt fa88f8adc1d6146cf399c6d17a37d098
results/dna/VAL2022-2-5M_T/additional_files/qc/VAL2022-2-5M_T.contamination.table a4ee6cd2e1cfe029229f5b218ac318e9
Expand All @@ -29,9 +29,10 @@ results/dna/VAL2022-2-5M_T/additional_files/vcf/vardict_VAL2022-2-5M_T.vcf.gz 22
results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.msisensor_pro.score.tsv e47f1fb00f0220a20335f972e1af8d39
results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.pathology_purecn.scarhrd_cnvkit_score.txt 55145eab2e60e588c66b233cf1479287
results/dna/VAL2022-2-5M_T/biomarker/VAL2022-2-5M_T.TMB.txt e20d98b80deb3ad74605c0439abda1f2
results/dna/VAL2022-2-5M_T/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_validated.cnv_report.tsv 9e423621153bb987efc66bf0cc25623d
results/dna/VAL2022-2-5M_T/cnv/VAL2022-2-5M_T.pathology_purecn.amp_all_del_validated.cnv_report.tsv 227717b4bc1de967c6ebeff9e240a274
results/dna/VAL2022-2-5M_T/fusion/VAL2022-2-5M_T.fuseq_wes.report.csv ada3432e93dd1ff64f9254d8c83c91c5
results/dna/VAL2022-2-5M_T/qc/VAL2022-2-5M_T.coverage_and_mutations.tsv 62666e179f8e43450e4dd65a75928e34
results/dna/VAL2022-2-5M_T/qc/VAL2022-2-5M_T.coverage_and_mutations.tsv 8921f53aa4902a009fb34b6e6db2a8da
results/dna/VAL2022-2-5M_T/qc/VAL2022-2-5M_T.coverage_and_mutations.ENC.tsv 5331bcd5647fac6ee1424b07b3a81651
results/dna/VAL2022-2-5M_T/vcf/VAL2022-2-5M_T.annotated.exon_only.filter.hard_filter.codon_snv.qci.vcf e9dc0afeeb5d2b738183ce465973b292
results/dna/VAL2022-2-5M_T/vcf/VAL2022-2-5M_T.annotated.exon_only.filter.hard_filter.codon_snv.vcf 7c62b3abce55f9eacce567211dbb0a1b
results/rna/SeraSeq-NTRK-FFPE-2-5M_R/additional_files/fusion/SeraSeq-NTRK-FFPE-2-5M_R.arriba.fusions.tsv eedffe64014818557f8fd9ea2c21fa7c
Expand Down
Loading