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Merge pull request #29 from genomic-medicine-sweden/new_amp_genes
feat: new cnv amp genes
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| chr1 11167521 11227594 MTOR | ||
| chr1 156785601 156851642 NTRK1 | ||
| chr2 16080688 16086239 MYCN | ||
| chr2 29416069 30143545 ALK | ||
| chr4 1795641 1809009 FGFR3 | ||
| chr4 55124915 55161459 PDGFRA | ||
| chr4 55524161 55604743 KIT | ||
| chr5 176516583 176524697 FGFR4 | ||
| chr7 55086950 55273330 EGFR | ||
| chr7 92244433 92462657 CDK6 | ||
| chr7 116312611 116436198 MET | ||
| chr7 140434376 140624523 BRAF | ||
| chr8 38271125 38325209 FGFR1 | ||
| chr8 128748819 128753224 MYC | ||
| chr9 21968207 21994350 CDKN2A | ||
| chr9 87285643 87636372 NTRK2 | ||
| chr10 89623686 89725324 PTEN | ||
| chr10 123239074 123357495 FGFR2 | ||
| chr12 25362708 25398338 KRAS | ||
| chr12 58144418 58145520 CDK4 | ||
| chr12 69202237 69233649 MDM2 | ||
| chr15 88420145 88799404 NTRK3 | ||
| chr17 37855792 37884317 ERBB2 | ||
| chr19 54169876 54266435 C19MC | ||
| chrX 66764968 66943703 AR |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| chr1 11107464 11167537 MTOR | ||
| chr1 156815809 156881850 NTRK1 | ||
| chr2 15940566 15946117 MYCN | ||
| chr2 29193203 29920679 ALK | ||
| chr4 1793914 1807282 FGFR3 | ||
| chr4 54258748 54295292 PDGFRA | ||
| chr4 54657994 54738577 KIT | ||
| chr5 177089582 177097696 FGFR4 | ||
| chr7 55019257 55205637 EGFR | ||
| chr7 92615119 92833343 CDK6 | ||
| chr7 116672557 116796144 MET | ||
| chr7 140734576 140924723 BRAF | ||
| chr8 38413607 38467691 FGFR1 | ||
| chr8 127736573 127740978 MYC | ||
| chr9 21968208 21994351 CDKN2A | ||
| chr9 84670728 85021457 NTRK2 | ||
| chr10 87863929 87965567 PTEN | ||
| chr10 121479560 121597981 FGFR2 | ||
| chr12 25209774 25245404 KRAS | ||
| chr12 57750635 57751737 CDK4 | ||
| chr12 68808457 68839869 MDM2 | ||
| chr15 87876914 88256173 NTRK3 | ||
| chr17 39699539 39728064 ERBB2 | ||
| chr19 53666622 53763181 C19MC | ||
| chrX 67545126 67723861 AR |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,26 @@ | ||
| #gene(s) chrmosome start_cnv_region stop_cnv_region gene_start gene_end | ||
| MTOR chr1 1167521 21227594 11167521 11227594 | ||
| NTRK1 chr1 146785601 166851642 156785601 156851642 | ||
| MYCN chr2 6080688 26086239 16080688 16086239 | ||
| ALK chr2 19416069 40143545 29416069 30143545 | ||
| FGFR3 chr4 -8204359 11809009 1795641 1809009 | ||
| PDGFRA chr4 45124915 65161459 55124915 55161459 | ||
| KIT chr4 45524161 65604743 55524161 55604743 | ||
| FGFR4 chr5 166516583 186524697 176516583 176524697 | ||
| EGFR chr7 45086950 65273330 55086950 55273330 | ||
| CDK6 chr7 82244433 102462657 92244433 92462657 | ||
| MET chr7 106312611 126436198 116312611 116436198 | ||
| BRAF chr7 130434376 150624523 140434376 140624523 | ||
| FGFR1 chr8 28271125 48325209 38271125 38325209 | ||
| MYC chr8 118748819 138753224 128748819 128753224 | ||
| CDKN2A chr9 11968207 31994350 21968207 21994350 | ||
| NTRK2 chr9 77285643 97636372 87285643 87636372 | ||
| PTEN chr10 79623686 99725324 89623686 89725324 | ||
| FGFR2 chr10 113239074 133357495 123239074 123357495 | ||
| KRAS chr12 15362708 35398338 25362708 25398338 | ||
| CDK4 chr12 48144418 68145520 58144418 58145520 | ||
| MDM2 chr12 59202237 79233649 69202237 69233649 | ||
| NTRK3 chr15 78420145 98799404 88420145 88799404 | ||
| ERBB2 chr17 27855792 47884317 37855792 37884317 | ||
| C19MC chr19 44169876 64266435 54169876 54266435 | ||
| AR chrX 56764968 76943703 66764968 66943703 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,26 @@ | ||
| #gene(s) chrmosome start_cnv_region stop_cnv_region gene_start gene_end | ||
| MTOR chr1 1107464 21167537 11107464 11167537 | ||
| NTRK1 chr1 146815809 166881850 156815809 156881850 | ||
| MYCN chr2 5940566 25946117 15940566 15946117 | ||
| ALK chr2 19193203 39920679 29193203 29920679 | ||
| FGFR3 chr4 -8206086 11807282 1793914 1807282 | ||
| PDGFRA chr4 44258748 64295292 54258748 54295292 | ||
| KIT chr4 44657994 64738577 54657994 54738577 | ||
| FGFR4 chr5 167089582 187097696 177089582 177097696 | ||
| EGFR chr7 45019257 65205637 55019257 55205637 | ||
| CDK6 chr7 82615119 102833343 92615119 92833343 | ||
| MET chr7 106672557 126796144 116672557 116796144 | ||
| BRAF chr7 130734576 150924723 140734576 140924723 | ||
| FGFR1 chr8 28413607 48467691 38413607 38467691 | ||
| MYC chr8 117736573 137740978 127736573 127740978 | ||
| CDKN2A chr9 11968208 31994351 21968208 21994351 | ||
| NTRK2 chr9 74670728 95021457 84670728 85021457 | ||
| PTEN chr10 77863929 97965567 87863929 87965567 | ||
| FGFR2 chr10 111479560 131597981 121479560 121597981 | ||
| KRAS chr12 15209774 35245404 25209774 25245404 | ||
| CDK4 chr12 47750635 67751737 57750635 57751737 | ||
| MDM2 chr12 58808457 78839869 68808457 68839869 | ||
| NTRK3 chr15 77876914 98256173 87876914 88256173 | ||
| ERBB2 chr17 29699539 49728064 39699539 39728064 | ||
| C19MC chr19 43666622 63763181 53666622 53763181 | ||
| AR chrX 57545126 77723861 67545126 67723861 |