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Read kraken report into dataframe
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@sofstam
sofstam committed Jul 29, 2022
1 parent 5799d1c commit 6fbd452
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Showing 6 changed files with 1,440 additions and 36 deletions.
3 changes: 2 additions & 1 deletion assets/samplesheet.csv
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sample,kraken2,centrifuge
sample1,/home/sofia.stamouli/gmsmetapost/assets/tsvs/Viruspool_pe-Viruspool-kraken2.kraken2.report.tsv,/home/sofia.stamouli/gmsmetapost/assets/tsvs/Viruspool_pe-Viruspool.centrifuge.tsv
barcode43,/home/sofia.stamouli/gmsmetapost/assets/tsvs/FAS11992_barcode43.kraken.report.tsv,/home/sofia.stamouli/gmsmetapost/assets/tsvs/FAS11992_barcode43.centrifuge.tsv
barcode34,/home/sofia.stamouli/gmsmetapost/assets/tsvs/FAR96832_pass_barcode34.kraken.report.tsv,/home/sofia.stamouli/gmsmetapost/assets/tsvs/FAR96832_pass_barcode34.centrifuge.tsv
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