Update emmtyper in base config

genomic-medicine-sweden · Nov 11, 2024 · 26f3fbf · 26f3fbf
1 parent d97c050
commit 26f3fbf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/configs/nextflow.base.config b/configs/nextflow.base.config
@@ -216,7 +216,7 @@ process {
 		ext.args_ska = {"${params.outdir}/${params.speciesDir}/ska"}
 	}
 	withName: emmtyper {
-		container = "emmtyper.sif"
+		container = "${params.containerDir}/emmtyper.sif"
 		publishDir = [ path: "${params.outdir}/${params.speciesDir}/emmtyper", mode: 'copy', overwrite: true ]
 	}
 	withName: export_to_cdm {