Fix perl-json.sif filepath

genomic-medicine-sweden · Feb 14, 2024 · 4d02d61 · 4d02d61
1 parent 164ba4f
commit 4d02d61
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/configs/nextflow.ci.config b/configs/nextflow.ci.config
@@ -79,7 +79,7 @@ process {
 		ext.args = "--plus"
 	}
 	withName: assembly_trim_clean {
-		container = "${params.containerDir}/perl.sif"
+		container = "${params.containerDir}/perl-json.sif"
 		cpus = 4
 		memory = '10 GB'
 		ext.args = "--min_quality 23 --bases_to_trim 400 --min_length 100 -p 1 --nosingletons"