Update v0.4.0 to v0.5.0

genomic-medicine-sweden · Feb 23, 2024 · 6022291 · 6022291
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Showing 9 changed files with 17 additions and 355 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Added
 
+### Fixed
+
+### Changed
+
+## [0.5.0]
+
+### Added
+
 - Added a GitHub workflow to run a basic CI pipeline.
 - Build prp as singularity image from dockerhub in Makefile
 - Chewbacca and virulencefinder sif fetched from galaxyproject

diff --git a/configs/nextflow.base.config b/configs/nextflow.base.config
@@ -253,8 +253,8 @@ dag {
 }
 
 manifest {
-	homePage = 'https://github.com/genomic-medicine-sweden/JASEN'
+	homePage = 'https://github.com/genomic-medicine-sweden/jasen'
 	description = 'Pipeline epitypes numerous bacterial species as well as identifies AMR and virulence genes'
 	mainScript = 'main.nf'
-	version = '0.4.0'
+	version = '0.5.0'
 }
diff --git a/configs/nextflow.ci.config b/configs/nextflow.ci.config
@@ -253,8 +253,8 @@ singularity {
 }
 
 manifest {
-	homePage = 'https://github.com/genomic-medicine-sweden/JASEN'
+	homePage = 'https://github.com/genomic-medicine-sweden/jasen'
 	description = 'Pipeline epitypes numerous bacterial species as well as identifies AMR and virulence genes'
 	mainScript = 'main.nf'
-	version = '0.4.0'
+	version = '0.5.0'
 }
diff --git a/configs/nextflow.hopper.config b/configs/nextflow.hopper.config
@@ -253,5 +253,5 @@ manifest {
 	homePage = 'https://github.com/genomic-medicine-sweden/jasen'
 	description = 'Pipeline epitypes numerous bacterial species as well as identifies AMR and virulence genes'
 	mainScript = 'main.nf'
-	version = '0.4.0'
+	version = '0.5.0'
 }
diff --git a/configs/nextflow.ngp.config b/configs/nextflow.ngp.config
@@ -254,8 +254,8 @@ process {
 }
 
 manifest {
-	homePage = 'https://github.com/genomic-medicine-sweden/JASEN'
+	homePage = 'https://github.com/genomic-medicine-sweden/jasen'
 	description = 'Pipeline epitypes numerous bacterial species as well as identifies AMR and virulence genes'
 	mainScript = 'main.nf'
-	version = '0.4.0'
+	version = '0.5.0'
 }
diff --git a/configs/nextflow.selftest.config b/configs/nextflow.selftest.config
@@ -253,8 +253,8 @@ process {
 }
 
 manifest {
-	homePage = 'https://github.com/genomic-medicine-sweden/JASEN'
+	homePage = 'https://github.com/genomic-medicine-sweden/jasen'
 	description = 'Pipeline epitypes numerous bacterial species as well as identifies AMR and virulence genes'
 	mainScript = 'main.nf'
-	version = '0.4.0'
+	version = '0.5.0'
 }
diff --git a/deploy/reqs/env-index-mini.yaml b/deploy/reqs/env-index-mini.yaml
diff --git a/deploy/reqs/env-index.yaml b/deploy/reqs/env-index.yaml
diff --git a/deploy/reqs/freeze.txt b/deploy/reqs/freeze.txt