Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Amrfinderplus add --organism as argument #246

Closed
ryanjameskennedy opened this issue Dec 15, 2023 · 0 comments · Fixed by #268
Closed

Amrfinderplus add --organism as argument #246

ryanjameskennedy opened this issue Dec 15, 2023 · 0 comments · Fixed by #268
Assignees
@mhkc @ryanjameskennedy
Labels
medium Medium priority
Milestone
Pipeline efficiency

Comments

@ryanjameskennedy
Copy link
Collaborator

As seen here, We should add the --organism argument to amrfinderplus to get interesting variants in the output.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@mhkc mhkc

@ryanjameskennedy ryanjameskennedy

Labels
medium Medium priority
Projects
None yet
Milestone
Pipeline efficiency
Development

Successfully merging a pull request may close this issue.

155 add serotypefinder module genomic-medicine-sweden/jasen
2 participants
@mhkc @ryanjameskennedy