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Update SVDB and fix CALL_SVS tests #1245

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Update SVDB and fix CALL_SVS tests

Update SVDB and fix CALL_SVS tests #1245

Triggered via pull request October 18, 2024 08:21
@fellen31fellen31
synchronize #434
fellen31:update-svdb
Status Success
Total duration 14m 27s
Artifacts –

ci.yml

on: pull_request
Matrix: test
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14 errors and 28 warnings
ANNOTATE_SVS docker NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
ANNOTATE_SVS docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet docker NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CALL_SVS docker NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SNV_ANNOTATION docker NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_ont_bam docker NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CALL_SVS docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_bam docker NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SNV_ANNOTATION docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SHORT_VARIANT_CALLING docker NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_ont_bam docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_bam docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SHORT_VARIANT_CALLING docker NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
ANNOTATE_SVS docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ANNOTATE_SVS docker NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
ANNOTATE_SVS docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ANNOTATE_SVS docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet docker NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CALL_SVS docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_SVS docker NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SNV_ANNOTATION docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SNV_ANNOTATION docker NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_ont_bam docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_ont_bam docker NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CALL_SVS docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
CALL_SVS docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_bam docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_bam docker NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SNV_ANNOTATION docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SNV_ANNOTATION docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SHORT_VARIANT_CALLING docker NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SHORT_VARIANT_CALLING docker NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_ont_bam docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_ont_bam docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_bam docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
samplesheet_multisample_bam docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SHORT_VARIANT_CALLING docker NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
SHORT_VARIANT_CALLING docker NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23