Update hifiasm to 0.20 (#440) #6
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| name: build docs | |
| # https://github.com/nf-cmgg/structural/blob/master/.github/workflows/build-docs.yml | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| - dev | |
| permissions: | |
| contents: write | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 # fetch all commits/branches | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - run: echo "cache_id=$(date --utc '+%V')" >> $GITHUB_ENV | |
| - name: Obtain version from nextflow config | |
| run: | | |
| version=$(grep "version" nextflow.config | tail -1 | sed -e s'/[^=]*= //' | cut -d "'" -f 2) | |
| [[ $version == *"dev"* ]] && pipeline_version="dev" || pipeline_version=$version | |
| echo "pipeline_version=$pipeline_version" >> $GITHUB_ENV | |
| - name: Setup git user | |
| run: | | |
| git config --global user.name "${{github.actor}}" | |
| git config --global user.email "${{github.actor}}@users.noreply.github.com" | |
| - uses: actions/cache@v3 | |
| with: | |
| key: mkdocs-material-${{ env.cache_id }} | |
| path: .cache | |
| restore-keys: | | |
| mkdocs-material- | |
| - name: Install dependencies | |
| run: pip install mkdocs-material pymdown-extensions pillow cairosvg mike | |
| - name: Build docs | |
| run: | | |
| [[ ${{ env.pipeline_version }} == "dev" ]] && mike deploy --push ${{ env.pipeline_version }} || mike deploy --push --update-aliases ${{ env.pipeline_version }} latest | |
| - name: Set default docs | |
| run: mike set-default --push latest |