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Merge CNV and SV calls #1350

Merge CNV and SV calls

Merge CNV and SV calls #1350

Triggered via pull request October 29, 2024 12:19
Status Cancelled
Total duration 3m 46s
Artifacts

ci.yml

on: pull_request
Matrix: test
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44 errors and 18 warnings
ANNOTATE_SVS | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
ANNOTATE_SVS | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_ont_bam | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
samplesheet_multisample_ont_bam | docker | NF-24.04.2
The operation was canceled.
samplesheet_multisample_ont_bam | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_bam | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
samplesheet_multisample_bam | docker | NF-24.04.2
The operation was canceled.
samplesheet_multisample_ont_bam | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
samplesheet_multisample_bam | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_ont_bam | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_ont_bam | docker | NF-latest-everything
The operation was canceled.
RANK_VARIANTS | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
RANK_VARIANTS | docker | NF-latest-everything
The operation was canceled.
RANK_VARIANTS | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
samplesheet | docker | NF-24.04.2
The operation was canceled.
samplesheet | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SHORT_VARIANT_CALLING | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
SHORT_VARIANT_CALLING | docker | NF-24.04.2
The operation was canceled.
SHORT_VARIANT_CALLING | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
RANK_VARIANTS | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
RANK_VARIANTS | docker | NF-24.04.2
The operation was canceled.
RANK_VARIANTS | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
CALL_SVS | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
CALL_SVS | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SNV_ANNOTATION | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
CALL_SVS | docker | NF-latest-everything
The operation was canceled.
SNV_ANNOTATION | docker | NF-24.04.2
The operation was canceled.
SNV_ANNOTATION | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet_multisample_bam | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
samplesheet_multisample_bam | docker | NF-latest-everything
The operation was canceled.
samplesheet_multisample_bam | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
samplesheet | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
samplesheet | docker | NF-latest-everything
The operation was canceled.
SNV_ANNOTATION | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
SNV_ANNOTATION | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SNV_ANNOTATION | docker | NF-latest-everything
The operation was canceled.
CALL_SVS | docker | NF-24.04.2
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
CALL_SVS | docker | NF-24.04.2
The operation was canceled.
CALL_SVS | docker | NF-24.04.2
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SHORT_VARIANT_CALLING | docker | NF-latest-everything
Canceling since a higher priority waiting request for 'nf-core CI-429' exists
SHORT_VARIANT_CALLING | docker | NF-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
SHORT_VARIANT_CALLING | docker | NF-latest-everything
The operation was canceled.
ANNOTATE_SVS | docker | NF-latest-everything
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ANNOTATE_SVS | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
ANNOTATE_SVS | docker | NF-24.04.2
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/setup-python@v4, mikepenz/action-junit-report@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
ANNOTATE_SVS | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_ont_bam | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_bam | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_ont_bam | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RANK_VARIANTS | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SHORT_VARIANT_CALLING | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
RANK_VARIANTS | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CALL_SVS | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SNV_ANNOTATION | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet_multisample_bam | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
samplesheet | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SNV_ANNOTATION | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
CALL_SVS | docker | NF-24.04.2
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
SHORT_VARIANT_CALLING | docker | NF-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23