Fixed join in test

genomic-medicine-sweden · Oct 31, 2024 · 0261137 · 0261137
1 parent 173bff3
commit 0261137
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diff --git a/subworkflows/local/methylation/tests/main.nf.test b/subworkflows/local/methylation/tests/main.nf.test
@@ -60,7 +60,11 @@ nextflow_workflow {
                 """
                 input[0] = SHORT_VARIANT_CALLING.out.snp_calls_vcf
                 input[1] = SHORT_VARIANT_CALLING.out.snp_calls_tbi
-                input[2] = MINIMAP2_ALIGN.out.bam.join(MINIMAP2_ALIGN.out.index)
+                input[2] = MINIMAP2_ALIGN.out.bam
+                            .join(MINIMAP2_ALIGN.out.index)
+                            .map { meta, bam, bai ->
+                                [ [ id : meta.id ], bam, bai ]
+                            }
                 input[3] = PREPARE_GENOME.out.fasta
                 input[4] = PREPARE_GENOME.out.fai
                 """