Update SVDB and fix CALL_SVS tests

genomic-medicine-sweden · Oct 18, 2024 · 0414941 · 0414941
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Showing 8 changed files with 514 additions and 36 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -56,6 +56,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#423](https://github.com/genomic-medicine-sweden/nallo/pull/423) - Updated metro map
 - [#428](https://github.com/genomic-medicine-sweden/nallo/pull/428) - Changed from using bcftools to SVDB for SV merging
 - [#431](https://github.com/genomic-medicine-sweden/nallo/pull/431) - Changed `CITATIONS.md` to `docs/CITATIONS.md`,
+- [#434](https://github.com/genomic-medicine-sweden/nallo/pull/434) - Updated the SVDB merge module to fix unstable CALL_SVS tests
 
 ### `Removed`
 

diff --git a/modules.json b/modules.json
@@ -246,7 +246,7 @@
                     },
                     "svdb/merge": {
                         "branch": "master",
-                        "git_sha": "847683c1bb3a94d846e18916f14c2bc60a447041",
+                        "git_sha": "b80931c5be241910c62795bbf70534df18b3905f",
                         "installed_by": ["modules"]
                     },
                     "svdb/query": {

diff --git a/modules/nf-core/svdb/merge/main.nf b/modules/nf-core/svdb/merge/main.nf
diff --git a/modules/nf-core/svdb/merge/meta.yml b/modules/nf-core/svdb/merge/meta.yml