Use project name in echtvar encode

genomic-medicine-sweden · Aug 13, 2024 · ac4fe24 · ac4fe24
1 parent 0c98285
commit ac4fe24
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -55,6 +55,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [#306](https://github.com/genomic-medicine-sweden/nallo/pull/306) - Updated echtvar version
 - [#307](https://github.com/genomic-medicine-sweden/nallo/pull/307) - Changed somalier relate to also run per sample on sampes with unknown sex, removing the need to wait on all samples to finish aligment before starting variant calling
 - [#307](https://github.com/genomic-medicine-sweden/nallo/pull/307) - Changed the removal of n_files from meta from bam_infer_sex to nallo.nf
+- [#312](https://github.com/genomic-medicine-sweden/nallo/pull/312) - Changed echtvar encode database creation to use dynamic `${project}` from samplesheet
 
 ### `Removed`
 

diff --git a/modules/local/echtvar/encode/main.nf b/modules/local/echtvar/encode/main.nf
@@ -23,12 +23,12 @@ process ECHTVAR_ENCODE {
     [
         {
             "field": "AF",
-            "alias": "COHORT_AF",
+            "alias": "${meta.id}_af",
             "multiplier": 1000000
         },
         {
             "field": "AC",
-            "alias": "COHORT_AC",
+            "alias": "${meta.id}_ac",
             "multiplier": 1000000
         },