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Add support for uBAM and multisample test #51

Merged
merged 18 commits into from
Mar 28, 2024
Merged

Add support for uBAM and multisample test #51

merged 18 commits into from
Mar 28, 2024

Commits on Mar 27, 2024

  1. Add ubam support

    @fellen31
    fellen31 committed Mar 27, 2024
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  2. update workflows

    @fellen31
    fellen31 committed Mar 27, 2024
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  3. update modules.json

    @fellen31
    fellen31 committed Mar 27, 2024
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  4. update config

    @fellen31
    fellen31 committed Mar 27, 2024
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  5. update subworkflow

    @fellen31
    fellen31 committed Mar 27, 2024
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  6. update main workflow

    @fellen31
    fellen31 committed Mar 27, 2024
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  7. update main workflow

    @fellen31
    fellen31 committed Mar 27, 2024
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  8. Add Revio BAM test data and a multisample-BAM samplesheet (genomic-me… 

    …dicine-sweden#50)

Add BAM test data and a multisample-BAM samplesheet
    @fellen31
    fellen31 committed Mar 27, 2024
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  9. add multisample test

    @fellen31
    fellen31 committed Mar 27, 2024
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  10. fix variable

    @fellen31
    fellen31 committed Mar 27, 2024
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  11. run split-alignment workflow and don't split deepvariant inputs

    @fellen31
    fellen31 committed Mar 27, 2024
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  12. formatting

    @fellen31
    fellen31 committed Mar 27, 2024
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  13. update CI

    @fellen31
    fellen31 committed Mar 27, 2024
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  14. fix formatting

    @fellen31
    fellen31 committed Mar 27, 2024
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  15. Update CHANGELOG

    @fellen31
    fellen31 committed Mar 27, 2024
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  16. Merge branch 'dev' into add-ubam-support-2

    @fellen31
    fellen31 authored Mar 27, 2024
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  17. remove fastq multisample samplesheet

    @fellen31
    fellen31 committed Mar 27, 2024
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  18. remove fastq.gz.bam file

    @fellen31
    fellen31 committed Mar 27, 2024
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