Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add CNV calling workflow to test profile #68

Merged
merged 3 commits into from
Apr 5, 2024
Merged

Add CNV calling workflow to test profile #68

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
5aa2837
Don't skip cnv calling workflow
fellen31 Apr 4, 2024
a7bc934
Update CHANGELOG
fellen31 Apr 4, 2024
08759ec
Merge branch 'dev' into test_cnv_workflow
fellen31 Apr 5, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ Initial release of genomic-medicine-sweden/skierfe, created with the [nf-core](h

### `Added`

- Added CNV workflow to test profile [#68](https://github.com/genomic-medicine-sweden/skierfe/pull/68)
- Update and rename output directories [#65](https://github.com/genomic-medicine-sweden/skierfe/pull/65)
- Update GLNexus version [#58](https://github.com/genomic-medicine-sweden/skierfe/pull/58)
- Added uBAM support and multisample test [#51](https://github.com/genomic-medicine-sweden/skierfe/pull/51)
Expand Down
1 change: 0 additions & 1 deletion conf/test.config
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -41,7 +41,6 @@ params {

// Not tested
skip_snv_annotation = true
skip_cnv_calling = true

parallel_snv = 3 // Create 3 parallel DeepVariant processes
preset = "revio"
Expand Down
Loading