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[#28] Reduced mapping. Added abcd:AgentText.
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mernst committed Aug 5, 2024
1 parent cd626c0 commit 3600d04
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Showing 2 changed files with 37 additions and 104 deletions.
137 changes: 36 additions & 101 deletions transformations/abcd2bioschemas/abcd2bioschemas-xml.xslt
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Original file line number Diff line number Diff line change
Expand Up @@ -416,116 +416,51 @@ exclude-result-prefixes="xsl md panxslt set">
<!-- After updating to XSLT 2.0, both the code below and the author mapping code can be moved to a separate function -->
<xsl:for-each select="$gathering_agents[not(.=preceding::*)]">
<xsl:choose>
<xsl:when test="./abcd:Person">
<contributor type="Person">
<!-- identifier -->
<xsl:if test="./abcd:URIs/*[self::abcd:URI or self::abcd:URL]">
<xsl:choose>
<xsl:when test="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][@preferred='true']">
<xsl:attribute name="id"><xsl:value-of select="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][@preferred='true'][1]"/></xsl:attribute>
</xsl:when>
<xsl:otherwise>
<xsl:attribute name="id"><xsl:value-of select="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][1]"/></xsl:attribute>
</xsl:otherwise>
</xsl:choose>
<xsl:for-each select="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][not(.=preceding::*)]">
<identifier><xsl:value-of select="."/></identifier>
</xsl:for-each>
</xsl:if>

<!-- name -->
<name><xsl:value-of select="./abcd:Person/abcd:FullName"/></name>
<xsl:if test="./abcd:Person/abcd:AtomisedName/abcd:InheritedName">
<familyName><xsl:value-of select="./abcd:Person/abcd:AtomisedName/abcd:InheritedName"/></familyName>
</xsl:if>
<xsl:if test="./abcd:Person/abcd:AtomisedName/abcd:GivenNames">
<givenName><xsl:value-of select="./abcd:Person/abcd:AtomisedName/abcd:GivenNames"/></givenName>
</xsl:if>

<!-- email -->
<xsl:choose>
<xsl:when test="./abcd:EmailAddresses/abcd:EmailAddress[@preferred='true']">
<email><xsl:value-of select="./abcd:EmailAddresses/abcd:EmailAddress[@preferred='true'][1]"/></email>
</xsl:when>
<xsl:otherwise>
<xsl:for-each select="./abcd:EmailAddresses/abcd:EmailAddress">
<emai1><xsl:value-of select="."/></emai1>
</xsl:for-each>
</xsl:otherwise>
</xsl:choose>
<xsl:when test="./abcd:Person or ./abcd:Organisation">
<xsl:choose>
<xsl:when test="./abcd:Person">
<contributor type="Person">

<!-- name -->
<name><xsl:value-of select="./abcd:Person/abcd:FullName"/></name>
<xsl:if test="./abcd:Person/abcd:AtomisedName/abcd:InheritedName">
<familyName><xsl:value-of select="./abcd:Person/abcd:AtomisedName/abcd:InheritedName"/></familyName>
</xsl:if>
<xsl:if test="./abcd:Person/abcd:AtomisedName/abcd:GivenNames">
<givenName><xsl:value-of select="./abcd:Person/abcd:AtomisedName/abcd:GivenNames"/></givenName>
</xsl:if>

<!-- phone -->
<xsl:choose>
<xsl:when test="./abcd:TelephoneNumbers/abcd:TelephoneNumber[@preferred='true']">
<telephone><xsl:value-of select="./abcd:TelephoneNumbers/abcd:TelephoneNumber[@preferred='true'][1]/abcd:Number"/></telephone>
</xsl:when>
<xsl:otherwise>
<xsl:for-each select="./abcd:TelephoneNumbers/abcd:TelephoneNumber">
<telephone><xsl:value-of select="./abcd:Number"/></telephone>
</xsl:for-each>
</xsl:otherwise>
</xsl:choose>
<!-- affiliation: Organization -->
<xsl:if test="./abcd:Organisation">
<affiliation type="Organization">
<!-- name -->
<name><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Text"/></name>
<xsl:if test="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation">
<alternateName><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation"/></alternateName>
</xsl:if>
</affiliation>
</xsl:if>
</contributor>
</xsl:when>

<!-- affiliation: Organization -->
<xsl:if test="./abcd:Organisation">
<affiliation type="Organization">
<!-- organisation as contributor -->
<xsl:otherwise>
<contributor type="Organization">
<!-- name -->
<name><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Text"/></name>
<xsl:if test="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation">
<alternateName><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation"/></alternateName>
</xsl:if>
</affiliation>
</xsl:if>
</contributor>
</contributor>
</xsl:otherwise>
</xsl:choose>
</xsl:when>
<xsl:otherwise>
<!-- organisation as contributor -->
<contributor type="Organization">
<!-- identifier -->
<xsl:if test="./abcd:URIs/*[self::abcd:URI or self::abcd:URL]">
<xsl:choose>
<xsl:when test="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][@preferred='true']">
<xsl:attribute name="id"><xsl:value-of select="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][@preferred='true'][1]"/></xsl:attribute>
</xsl:when>
<xsl:otherwise>
<xsl:attribute name="id"><xsl:value-of select="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][1]"/></xsl:attribute>
</xsl:otherwise>
</xsl:choose>
<xsl:for-each select="./abcd:URIs/*[self::abcd:URI or self::abcd:URL][not(.=preceding::*)]">
<identifier><xsl:value-of select="."/></identifier>
</xsl:for-each>
</xsl:if>

<!-- name -->
<name><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Text"/></name>
<xsl:if test="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation">
<alternateName><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation"/></alternateName>
</xsl:if>

<!-- email -->
<xsl:choose>
<xsl:when test="./abcd:EmailAddresses/abcd:EmailAddress[@preferred='true']">
<email><xsl:value-of select="./abcd:EmailAddresses/abcd:EmailAddress[@preferred='true'][1]"/></email>
</xsl:when>
<xsl:otherwise>
<xsl:for-each select="./abcd:EmailAddresses/abcd:EmailAddress">
<emai1><xsl:value-of select="."/></emai1>
</xsl:for-each>
</xsl:otherwise>
</xsl:choose>

<!-- phone -->
<xsl:choose>
<xsl:when test="./abcd:TelephoneNumbers/abcd:TelephoneNumber[@preferred='true']">
<telephone><xsl:value-of select="./abcd:TelephoneNumbers/abcd:TelephoneNumber[@preferred='true'][1]/abcd:Number"/></telephone>
</xsl:when>
<xsl:otherwise>
<xsl:for-each select="./abcd:TelephoneNumbers/abcd:TelephoneNumber">
<telephone><xsl:value-of select="./abcd:Number"/></telephone>
</xsl:for-each>
</xsl:otherwise>
</xsl:choose>
</contributor>
<xsl:if test="./abcd:AgentText">
<contributor type="Thing">
<name><xsl:value-of select="./abcd:AgentText"/></name>
</contributor>
</xsl:if>
</xsl:otherwise>
</xsl:choose>
</xsl:for-each>
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4 changes: 1 addition & 3 deletions transformations/abcd2bioschemas/example_files/HoffmannPlantsV3.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -280,9 +280,7 @@
</DateTime>
<Agents>
<GatheringAgent>
<Person>
<FullName>Anke Hoffmann</FullName>
</Person>
<AgentText>Anna Förster, Arno Förster</AgentText>
</GatheringAgent>
</Agents>
<LocalityText>Queen Elizabeth National Park; Crater Road</LocalityText>
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