[#26] Update XSLT and Jupyter NB. Extend example.

gfbio · Jul 31, 2024 · cbc1a96 · cbc1a96
1 parent e78754d
commit cbc1a96
Show file tree

Hide file tree

Showing 3 changed files with 312 additions and 404 deletions.
diff --git a/transformations/abcd2bioschemas/abcd2bioschemas-xml.xslt b/transformations/abcd2bioschemas/abcd2bioschemas-xml.xslt
@@ -34,6 +34,7 @@ exclude-result-prefixes="xsl md panxslt set">
   <xsl:variable name="scope_geoecological" select="/abcd:DataSets/abcd:DataSet/abcd:Metadata/abcd:Scope/abcd:GeoecologicalTerms/*[self::abcd:GeoecologicalTerm or self::abcd:GeoEcologicalTerm]"></xsl:variable>
 
   <xsl:variable name="recordbasis" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:RecordBasis"></xsl:variable>
+  <xsl:variable name="unit_references" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:UnitReferences"></xsl:variable>
   <xsl:variable name="coordinates" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:Gathering/abcd:SiteCoordinateSets/abcd:SiteCoordinates/abcd:CoordinatesLatLong"></xsl:variable>
   <xsl:variable name="country" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:Gathering/abcd:Country/abcd:Name"></xsl:variable>
   <xsl:variable name="gathering_date" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:Gathering/abcd:DateTime"></xsl:variable>
@@ -231,6 +232,25 @@ exclude-result-prefixes="xsl md panxslt set">
       <xsl:for-each select="$lithostratigraphic[not(.=preceding::*)]">  
         <keyword><xsl:value-of select="."/></keyword>
       </xsl:for-each>
+
+      <!-- @reverse -->
+      <xsl:element name="reverse">
+        <xsl:for-each select="$unit_references">
+          <xsl:for-each select="./abcd:UnitReference[not(.=preceding::*)]">
+            <citation type="CreativeWork">
+              <xsl:if test="./abcd:TitleCitation">
+                <name><xsl:value-of select="./abcd:TitleCitation"/></name>
+              </xsl:if>
+              <xsl:if test="./abcd:CitationDetail">
+                <description><xsl:value-of select="./abcd:CitationDetail"/></description>
+              </xsl:if>
+              <xsl:if test="./abcd:URI">
+                <identifier><xsl:value-of select="./abcd:URI"/></identifier>
+              </xsl:if>
+            </citation>
+          </xsl:for-each>
+        </xsl:for-each>
+      </xsl:element>
 
       <xsl:for-each select="$taxon_name[not(.=preceding::*)]">  
         <about type="Taxon">