Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

[#28] Add gathering agent mapping #35

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
Open

[#28] Add gathering agent mapping #35

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
cd626c0
[#28] Add agent mapping and example.
Aug 5, 2024
3600d04
[#28] Reduced mapping. Added abcd:AgentText.
Aug 5, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
55 changes: 54 additions & 1 deletion transformations/abcd2bioschemas/abcd2bioschemas-xml.xslt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,7 @@ exclude-result-prefixes="xsl md panxslt set">
<xsl:variable name="scope_geoecological" select="/abcd:DataSets/abcd:DataSet/abcd:Metadata/abcd:Scope/abcd:GeoecologicalTerms/*[self::abcd:GeoecologicalTerm or self::abcd:GeoEcologicalTerm]"></xsl:variable>

<xsl:variable name="recordbasis" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:RecordBasis"></xsl:variable>
<xsl:variable name="gathering_agents" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:Gathering/abcd:Agents/abcd:GatheringAgent"></xsl:variable>
<xsl:variable name="coordinates" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:Gathering/abcd:SiteCoordinateSets/abcd:SiteCoordinates/abcd:CoordinatesLatLong"></xsl:variable>
<xsl:variable name="country" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:Gathering/abcd:Country/abcd:Name"></xsl:variable>
<xsl:variable name="gathering_date" select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit/abcd:Gathering/abcd:DateTime"></xsl:variable>
Expand Down Expand Up @@ -411,8 +412,60 @@ exclude-result-prefixes="xsl md panxslt set">
<name><xsl:value-of select="$dataset_contributors"/></name>
</contributor>
</xsl:if>

<!-- After updating to XSLT 2.0, both the code below and the author mapping code can be moved to a separate function -->
<xsl:for-each select="$gathering_agents[not(.=preceding::*)]">
<xsl:choose>
<xsl:when test="./abcd:Person or ./abcd:Organisation">
<xsl:choose>
<xsl:when test="./abcd:Person">
<contributor type="Person">

<!-- name -->
<name><xsl:value-of select="./abcd:Person/abcd:FullName"/></name>
<xsl:if test="./abcd:Person/abcd:AtomisedName/abcd:InheritedName">
<familyName><xsl:value-of select="./abcd:Person/abcd:AtomisedName/abcd:InheritedName"/></familyName>
</xsl:if>
<xsl:if test="./abcd:Person/abcd:AtomisedName/abcd:GivenNames">
<givenName><xsl:value-of select="./abcd:Person/abcd:AtomisedName/abcd:GivenNames"/></givenName>
</xsl:if>

<!-- affiliation: Organization -->
<xsl:if test="./abcd:Organisation">
<affiliation type="Organization">
<!-- name -->
<name><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Text"/></name>
<xsl:if test="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation">
<alternateName><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation"/></alternateName>
</xsl:if>
</affiliation>
</xsl:if>
</contributor>
</xsl:when>

<!-- organisation as contributor -->
<xsl:otherwise>
<contributor type="Organization">
<!-- name -->
<name><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Text"/></name>
<xsl:if test="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation">
<alternateName><xsl:value-of select="./abcd:Organisation/abcd:Name/abcd:Representation/abcd:Abbreviation"/></alternateName>
</xsl:if>
</contributor>
</xsl:otherwise>
</xsl:choose>
</xsl:when>
<xsl:otherwise>
<xsl:if test="./abcd:AgentText">
<contributor type="Thing">
<name><xsl:value-of select="./abcd:AgentText"/></name>
</contributor>
</xsl:if>
</xsl:otherwise>
</xsl:choose>
</xsl:for-each>

<!-- TODO:
- Gathering Agents as contributors?
- variableMeasured
-->
</jsonld>
Expand Down
8 changes: 3 additions & 5 deletions transformations/abcd2bioschemas/example_files/HoffmannPlantsV3.xml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -157,7 +157,7 @@
<Agents>
<GatheringAgent>
<Person>
<FullName>Anke Hoffmann</FullName>
<FullName>Max Mustermann</FullName>
</Person>
</GatheringAgent>
</Agents>
Expand Down Expand Up @@ -215,7 +215,7 @@
<Agents>
<GatheringAgent>
<Person>
<FullName>Anke Hoffmann</FullName>
<FullName>Anna Förster</FullName>
</Person>
</GatheringAgent>
</Agents>
Expand Down Expand Up @@ -280,9 +280,7 @@
</DateTime>
<Agents>
<GatheringAgent>
<Person>
<FullName>Anke Hoffmann</FullName>
</Person>
<AgentText>Anna Förster, Arno Förster</AgentText>
</GatheringAgent>
</Agents>
<LocalityText>Queen Elizabeth National Park; Crater Road</LocalityText>
Expand Down