bump igblast versions

ggabernet · Mar 8, 2024 · e1da721 · e1da721
1 parent 74c28eb
commit e1da721
Show file tree

Hide file tree

Showing 9 changed files with 10 additions and 9 deletions.
diff --git a/modules/local/changeo/changeo_assigngenes.nf b/modules/local/changeo/changeo_assigngenes.nf
@@ -3,7 +3,7 @@ process CHANGEO_ASSIGNGENES {
     label 'process_low'
     label 'immcantation'
 
-    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.19.0 conda-forge::wget=1.20.1"
+    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.22.0 conda-forge::wget=1.20.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' :
         'biocontainers/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' }"

diff --git a/modules/local/changeo/changeo_convertdb_fasta.nf b/modules/local/changeo/changeo_convertdb_fasta.nf
@@ -4,7 +4,7 @@ process CHANGEO_CONVERTDB_FASTA {
     label 'immcantation'
 
 
-    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.19.0 conda-forge::wget=1.20.1"
+    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.22.0 conda-forge::wget=1.20.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' :
         'biocontainers/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' }"

diff --git a/modules/local/changeo/changeo_creategermlines.nf b/modules/local/changeo/changeo_creategermlines.nf
@@ -4,7 +4,7 @@ process CHANGEO_CREATEGERMLINES {
     label 'immcantation'
 
 
-    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.19.0 conda-forge::wget=1.20.1"
+    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.22.0 conda-forge::wget=1.20.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' :
         'biocontainers/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' }"

diff --git a/modules/local/changeo/changeo_makedb.nf b/modules/local/changeo/changeo_makedb.nf
@@ -4,8 +4,9 @@ process CHANGEO_MAKEDB {
     label 'immcantation'
 
 
-    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.19.0 conda-forge::wget=1.20.1"
+    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.22.0 conda-forge::wget=1.20.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+    //TODO: update mulled containers when available
         'https://depot.galaxyproject.org/singularity/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' :
         'biocontainers/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' }"
 

diff --git a/modules/local/changeo/changeo_parsedb_select.nf b/modules/local/changeo/changeo_parsedb_select.nf
@@ -4,7 +4,7 @@ process CHANGEO_PARSEDB_SELECT {
     label 'immcantation'
 
 
-    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.19.0 conda-forge::wget=1.20.1"
+    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.22.0 conda-forge::wget=1.20.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' :
         'biocontainers/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' }"

diff --git a/modules/local/changeo/changeo_parsedb_split.nf b/modules/local/changeo/changeo_parsedb_split.nf
@@ -4,7 +4,7 @@ process CHANGEO_PARSEDB_SPLIT {
     label 'immcantation'
 
 
-    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.19.0 conda-forge::wget=1.20.1"
+    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.22.0 conda-forge::wget=1.20.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' :
         'biocontainers/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' }"

diff --git a/modules/local/fetch_databases.nf b/modules/local/fetch_databases.nf
@@ -3,7 +3,7 @@ process FETCH_DATABASES {
     label 'process_low'
     label 'immcantation'
 
-    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.19.0 conda-forge::wget=1.20.1"
+    conda "bioconda::changeo=1.3.0 bioconda::igblast=1.22.0 conda-forge::wget=1.20.1"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' :
         'biocontainers/mulled-v2-7d8e418eb73acc6a80daea8e111c94cf19a4ecfd:00534555924705cdf2f7ac48b4b8b4083527ca58-1' }"

diff --git a/modules/local/gunzip.nf b/modules/local/gunzip.nf
@@ -5,7 +5,7 @@ process GUNZIP {
     conda "conda-forge::sed=4.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv1/biocontainers_v1.2.0_cv1.img' :
-        'docker.io/biocontainers/biocontainers:v1.2.0_cv1' }"
+        'biocontainers/biocontainers:v1.2.0_cv1' }"
 
     input:
     tuple val(meta), path(R1), path(R2)

diff --git a/modules/local/unzip_db.nf b/modules/local/unzip_db.nf
@@ -5,7 +5,7 @@ process UNZIP_DB {
     conda "conda-forge::sed=4.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://containers.biocontainers.pro/s3/SingImgsRepo/biocontainers/v1.2.0_cv1/biocontainers_v1.2.0_cv1.img' :
-        'docker.io/biocontainers/biocontainers:v1.2.0_cv1' }"
+        'biocontainers/biocontainers:v1.2.0_cv1' }"
 
     input:
     path(archive)