Merge pull request nf-core#304 from ggabernet/dev

Making Immcantation container CI tests optional
ggabernet · Feb 15, 2024 · e80c15c · e80c15c
2 parents dd0ef85 + 337f6fe
commit e80c15c
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Showing 3 changed files with 8 additions and 8 deletions.
diff --git a/.github/workflows/ci_immcantation.yml b/.github/workflows/ci_immcantation.yml
@@ -1,4 +1,4 @@
-name: nf-core CI immcantation
+name: Immcantation
 # This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
 on:
   pull_request:

diff --git a/.github/workflows/download_pipeline.yml b/.github/workflows/download_pipeline.yml
@@ -64,4 +64,4 @@ jobs:
         env:
           NXF_SINGULARITY_CACHEDIR: ./
           NXF_SINGULARITY_HOME_MOUNT: true
-        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results 
+        run: nextflow run ./${{ env.REPOTITLE_LOWERCASE }}/$( sed 's/\W/_/g' <<< ${{ env.REPO_BRANCH }}) -stub -profile test,singularity --outdir ./results
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -5,10 +5,10 @@ lint:
     - report_comment
   nextflow_config:
     - config_defaults:
-      - params.miairr
-      - params.report_rmd
-      - params.report_css
-      - params.report_logo
-      - params.report_logo_img
-      - params.config_profile_url
+        - params.miairr
+        - params.report_rmd
+        - params.report_css
+        - params.report_logo
+        - params.report_logo_img
+        - params.config_profile_url
 repository_type: pipeline