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@giffordlabcvr

Rob J. Gifford Lab

Comparative Virus Research | Collaborative Virus Research
README.md

Overview

The Gifford Lab conducts scientific investigations into the evolution of viruses and their impact on host species.

Software & Resources

We are dedicated to advancing comparative genomics by creating open resources that promote collaborative research.

Our main focus is the GLUE software framework and various genomics resources developed using this framework.

We have also developed the DIGS tool - a framework for performing systematic in silico genome screening.

Pinned Loading

  1. gluetools gluetools Public

    An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

    Java 11 2

  2. HCV-GLUE HCV-GLUE Public

    A GLUE project for Hepatitis C virus (HCV)

    F* 1

  3. RABV-GLUE RABV-GLUE Public

    A GLUE project for Rabies Virus (RABV).

    JavaScript 1

  4. Dengue-GLUE Dengue-GLUE Public

    A GLUE project for dengue virus (DENV)

    JavaScript

  5. DIGS-tool DIGS-tool Public

    Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.

    Perl 11 6

  6. HBV-GLUE HBV-GLUE Public

    A GLUE project for hepatitis B virus (HBV).

    JavaScript 1 1

Repositories

Showing 10 of 48 repositories
  • NCBI-HCV-GLUE Public

    Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.

    giffordlabcvr/NCBI-HCV-GLUE’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 15, 2024
  • RVdb Public

    A GLUE project for retroviruses (family Retroviridae)

    giffordlabcvr/RVdb’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 14, 2024
  • Lentivirus-GLUE-FIV Public

    Extension to Lentivirus-GLUE - contains all published feline lentivirus data from NCBI

    giffordlabcvr/Lentivirus-GLUE-FIV’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Nov 14, 2024
  • Lentivirus-GLUE-Bovine Public

    Extension to Lentivirus-GLUE - contains all published bovine lentivirus data from NCBI

    giffordlabcvr/Lentivirus-GLUE-Bovine’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Nov 14, 2024
  • .github Public

    Organisation overview

    giffordlabcvr/.github’s past year of commit activity
    0 0 0 0 Updated Nov 12, 2024
  • Flu-GLUE Public

    A GLUE project for influenzaviruses

    giffordlabcvr/Flu-GLUE’s past year of commit activity
    Perl 1 GPL-3.0 0 0 0 Updated Nov 6, 2024
  • NCBI-Dengue-GLUE Public

    Extension to Dengue-GLUE - adds all published DENV data from NCBI.

    giffordlabcvr/NCBI-Dengue-GLUE’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 6, 2024
  • Lentivirus-GLUE-SRLV Public

    Extension to Lentivirus-GLUE - adds all published small ruminant lentivirus data from NCBI, plus analysis logic

    giffordlabcvr/Lentivirus-GLUE-SRLV’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 6, 2024
  • Lentivirus-GLUE-Primates Public

    Extension to Lentivirus-GLUE - adds all published primate lentivirus data from NCBI

    giffordlabcvr/Lentivirus-GLUE-Primates’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated Nov 4, 2024
  • IFNL-Evolution Public

    Resources supporting comparative and phylogenetic analysis of IFNL genes

    giffordlabcvr/IFNL-Evolution’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 3, 2024
View all repositories

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