Skip to content

0.1.0
Compare
Choose a tag to compare
@mikecormier mikecormier released this 10 Nov 02:59
· 145 commits to master since this release
v0.1.0
7ab48ca
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

The official release of ggd cli

ggd cli is set up to work with the ggd-recipes repo for the dataset management, as well as local and global ggd specific metadata.

An automated continuous integration system is implemented for testing and validation of the cli, ggd data packages, package caching, and metadata.

GGD command-line interface tools include:

  • ggd search: search for available data packages within the ggd ecosystem
  • ggd predict-path: predict the file path of a file from a data package that has not been installed yet. (Usefull for workflows like Snakemake)
  • ggd install: Install a data package(s) into your local conda environment
  • ggd uninstall: uninstall a data package from your local conda environment
  • ggd get-files: get the file path(s) for an installed data package
  • ggd list: list the installed data packages in your local conda environment
  • ggd show-env: show/list the local environment variables created for each installed data package
  • ggd pkg-info: get the package info for an installed data package
  • ggd make-recipe: create a GGD-Conda recipe from a simple bash script to add as a data package to the ggd ecosystem
  • ggd check-recipe: validate the recipe created from the ggd make-recipe command

GGD is set up to provide genomic data package management and access, as well as an easy way to create and contribute data recipes/packages to the GGD ecosystem

Assets 2
Loading