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0.1.3
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@mikecormier mikecormier released this 11 Aug 15:44
· 65 commits to master since this release
v0.1.3
f211f6e

Major Update to CLI to fix bugs, add functionality, and improved unit tests.

CLI Update
  • Update metadata dir permission
  • Update uninstall
  • Update metadata for each data package removed include run deps
  • Uninstall ggd specific run dependencies
  • Allow mutliple data packages to be uninstalled at the same time
  • Add reset for metadata reset
  • Handle metadata channeldata update with ggd specific run dependencies
  • Update metadata channeldata handling for local recipes
  • Add python 2 warning when using python 2
  • Fix error with packages uninstalled by conda but maintained by ggd
  • Bug fixes in check-sort-order
  • Update search with more stringent package searching and sorting
  • Update check-sort-order requirement
  • Skip env var activate (BUG)
  • Update support for alternative genome files
  • Yaml literal block handling
  • Add yaml literal block support
  • Add alternative genome file check-sort-order
  • Add checks for final files in check-recipes
  • Update stdout
  • Update normal conda install
  • Update install debuging
  • Update req
  • Update conda requirement collection
  • Update output to include approximate data file sizes
  • Update package handling
  • Update error report
  • Update conda and conda build requirements
  • Add file size as a field in the yaml file
  • Add strict channel priority to the .condarc
Test Update
  • Update and add test to uninstall
  • Add test for metadata reset
  • Test metadata channeldata handling for local recipes
  • Skip certian checks if python 2
  • Update check-recipe tests
  • Add test for error with packages uninstalled by conda but maintained by ggd
  • Test new check-sort-order
  • Require Python 3.7
  • Updates search tests for improved searching
  • Additional tests for alternative genome files
  • Update brew instructions
  • New xcode version
  • Test Yaml literal block handling
  • Add test for yaml literal block support
  • Add test for alternative genome file check-sort-order
  • Add test for getting approximate file sizes
  • Add support and tests for final-file-sizes
  • Update test for checking yaml updates
  • Update test for final file checks
  • update yaml file checks
  • Update Install tests
  • Test new package handling
  • Update checks for yaml tag info
  • test file size as a field in the yaml file
  • Update miniconda install for testing
  • Add strict channel priority to the .condarc
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