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@googlegenomics

Google Genomics

Tools for working with the Google Genomics API

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  1. readthedocs readthedocs Public archive

    Documentation for the Google Genomics cookbook.

    143 48

  2. gcp-variant-transforms gcp-variant-transforms Public

    GCP Variant Transforms

    Python 138 55

  3. dockerflow dockerflow Public archive

    Dockerflow is a workflow runner that uses Dataflow to run a series of tasks in Docker with the Pipelines API

    Java 97 17

  4. bigquery-examples bigquery-examples Public archive

    Advanced BigQuery examples on genomic data.

    Python 89 31

  5. spark-examples spark-examples Public archive

    Apache Spark jobs such as Principal Coordinate Analysis.

    Scala 74 38

  6. getting-started-bigquery getting-started-bigquery Public archive

    Examples of how to get started with genomics data in BigQuery in many languages.

    R 53 25

Repositories

Showing 10 of 21 repositories
  • dataflow-java Public archive

    Google Cloud Dataflow pipelines such as Identity-By-State as well as useful utility classes.

    googlegenomics/dataflow-java’s past year of commit activity
    Java 37 Apache-2.0 31 20 (1 issue needs help) 3 Updated Aug 9, 2023
  • .allstar Public archive
    googlegenomics/.allstar’s past year of commit activity
    0 1 0 0 Updated Dec 6, 2022
  • .github Public archive
    googlegenomics/.github’s past year of commit activity
    0 0 0 0 Updated Oct 26, 2022
  • gcp-variant-transforms Public

    GCP Variant Transforms

    googlegenomics/gcp-variant-transforms’s past year of commit activity
    Python 138 Apache-2.0 55 109 (3 issues need help) 4 Updated Mar 31, 2022
  • variant-annotation Public Forked from verilylifesciences/variant-annotation

    Use cloud technology to annotate human sequence variants in parallel.

    googlegenomics/variant-annotation’s past year of commit activity
    Jupyter Notebook 11 Apache-2.0 11 2 1 Updated Jun 4, 2021
  • readthedocs Public archive

    Documentation for the Google Genomics cookbook.

    googlegenomics/readthedocs’s past year of commit activity
    143 Apache-2.0 48 8 0 Updated May 20, 2020
  • pipelines-tools Public

    Tools for developing and running pipelines with the Genomics API

    googlegenomics/pipelines-tools’s past year of commit activity
    Go 24 Apache-2.0 11 6 3 Updated Jan 16, 2020
  • htsget Public archive

    Open Source implementation of the GA4GH htsget protocol for objects stored in Google Cloud Storage

    googlegenomics/htsget’s past year of commit activity
    Go 24 Apache-2.0 10 5 (1 issue needs help) 5 Updated Nov 19, 2019
  • gcp-deepvariant-runner Public

    This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

    googlegenomics/gcp-deepvariant-runner’s past year of commit activity
    Python 2 Apache-2.0 6 7 4 Updated Sep 11, 2019
  • cloudml-examples Public archive

    Examples of using CloudML with genomic data.

    googlegenomics/cloudml-examples’s past year of commit activity
    Python 18 Apache-2.0 11 0 0 Updated May 24, 2019
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