Bugfix: solve PETSc binary compatibility issues #165
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| name: CI_EXTRA | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| name: Tests ${{ matrix.version }} - petsc ${{ matrix.petsc_version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| JULIA_PETSC_LIBRARY: "/opt/petsc/${{ matrix.petsc_version }}/lib/libpetsc" | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: | |
| - '1.9' | |
| os: | |
| - ubuntu-latest | |
| arch: | |
| - x64 | |
| petsc_version: | |
| - '3.15.4' | |
| - '3.20.5' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache petsc | |
| id: cache-petsc | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{env.JULIA_PETSC_LIBRARY}} | |
| key: ${{ runner.os }}-build-${{ env.JULIA_PETSC_LIBRARY }}- | |
| restore-keys: | | |
| ${{ runner.os }}-build-${{ env.JULIA_PETSC_LIBRARY }}- | |
| ${{ runner.os }}-build- | |
| ${{ runner.os }}- | |
| - uses: julia-actions/setup-julia@v1 | |
| with: | |
| version: ${{ matrix.version }} | |
| arch: ${{ matrix.arch }} | |
| - name: Install petsc dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y wget gfortran g++ openmpi-bin libopenmpi-dev | |
| - name: Install petsc | |
| ##if: steps.cache-petsc.outputs.cache-hit != 'true' | |
| run: | | |
| CURR_DIR=$(pwd) | |
| PACKAGE=petsc | |
| VERSION=${{ matrix.petsc_version }} | |
| INSTALL_ROOT=/opt | |
| PETSC_INSTALL=$INSTALL_ROOT/$PACKAGE/$VERSION | |
| TAR_FILE=$PACKAGE-$VERSION.tar.gz | |
| URL="https://web.cels.anl.gov/projects/petsc/download/release-snapshots/" | |
| ROOT_DIR=/tmp | |
| SOURCES_DIR=$ROOT_DIR/$PACKAGE-$VERSION | |
| BUILD_DIR=$SOURCES_DIR/build | |
| wget -q $URL/$TAR_FILE -O $ROOT_DIR/$TAR_FILE | |
| mkdir -p $SOURCES_DIR | |
| tar xzf $ROOT_DIR/$TAR_FILE -C $SOURCES_DIR --strip-components=1 | |
| cd $SOURCES_DIR | |
| ./configure --prefix=$PETSC_INSTALL --with-cc=mpicc --with-cxx=mpicxx --with-fc=mpif90 \ | |
| --download-mumps --download-scalapack --download-parmetis --download-metis \ | |
| --download-ptscotch --with-debugging --with-x=0 --with-shared=1 \ | |
| --with-mpi=1 --with-64-bit-indices | |
| make | |
| make install | |
| - name: add MPIPreferences | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using Pkg | |
| Pkg.add("MPIPreferences") | |
| - name: use MPI system binary | |
| shell: julia --color=yes --project=. {0} | |
| run: | | |
| using MPIPreferences | |
| MPIPreferences.use_system_binary() | |
| - run: julia --project=. -e 'using Pkg; Pkg.instantiate(); Pkg.build(); Pkg.precompile()' | |
| - run: julia --project=. --color=yes --check-bounds=yes test/sequential/runtests.jl | |
| - run: julia --project=. --color=yes --check-bounds=yes test/mpi/runtests.jl |