starcode-1.4

• starcode-umi is now compatible with Python 3

starcode-1.3

New features:

• Added support for UMI-tagged sequencing reads.
• Updated message passing clustering algorithm. Decision is made on ambiguous cluster assignments and no sequences are dropped at the output.
• Updated spheres clustering algorithm. Spheres is now less greedy and produces more meaningful results.
• Improved performance of sequence-id output.
• Message passing now supports -r1.
• Fixed several bugs.

starcode-1.2-stable

New features:

• Corrected bug in --print-clusters.

starcode-1.1-stable

New features:

• New clustering method: connected components.
• Sequence id output.
• Bug fixes.

starcode v1.0

First starcode release (v1.0)

Features:

• Exact all-pairs search using Levenshtein distance threshold.
• Clustering using spheres or message passing.
• Clustering of single or paired-end files.
• Multithreading support.
• Inputs supported: file or stdin.
• Outputs supported: file or stdout.
• Output formats: full cluster or non-redundant.