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Extract units from SBML and implement operations #185

Merged
merged 11 commits into from
Jul 5, 2023
Merged

Extract units from SBML and implement operations #185

merged 11 commits into from
Jul 5, 2023

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bgyori
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@bgyori bgyori commented Jun 28, 2023

This PR implements the extraction and normalization of units from SBML. It also implements handling of units when models are changed to aggregate multiple parameters.

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codecov-commenter commented Jun 28, 2023

Codecov Report

Merging #185 (36237b6) into main (79a11a9) will increase coverage by 0.02%.
The diff coverage is 79.31%.

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@@            Coverage Diff             @@
##             main     #185      +/-   ##
==========================================
+ Coverage   76.45%   76.47%   +0.02%     
==========================================
  Files          65       65              
  Lines        4977     5024      +47     
==========================================
+ Hits         3805     3842      +37     
- Misses       1172     1182      +10     
Impacted Files Coverage Δ
mira/metamodel/ops.py 76.22% <0.00%> (-3.34%) ⬇️
mira/modeling/askenet/petrinet.py 95.70% <ø> (ø)
mira/sources/sbml/processor.py 59.79% <89.79%> (+2.74%) ⬆️
mira/resources/__init__.py 100.00% <100.00%> (ø)

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@bgyori bgyori merged commit 82421e4 into main Jul 5, 2023
2 of 4 checks passed
@bgyori bgyori deleted the sbml_units branch July 6, 2023 16:27
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2 participants