Addition of ontology terms and subtree terms #363
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This PR creates a new endpoint:
add_ontology_subtree, that takes in a term from an ontology and adds it to the epi DKG. The option to add any term in the subtree under the specific term that has been added also exists. Currently we can only process the ncbitaxonomy.A demo notebook has been added. We first ensure that the ontology obo file exists in its respective version directory in
~/.data/pyobo/raw. We then convert the obo file into a networkx graph and normalize node indicies. Converting the obo file into a networkx graph takes a long time so we also pickle the graph and check to see if it exists in the same location as its respective resource version obo file before performing any obo conversion to networkx.