Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add obo pickled graphs to docker build #367

Merged
merged 9 commits into from
Sep 23, 2024
Merged

Add obo pickled graphs to docker build #367

merged 9 commits into from
Sep 23, 2024

Commits on Sep 20, 2024

  1. Create script to generate ncbitaxon obo graph and add it to mira dock… 

    …er image
    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    655979b View commit details
    Browse the repository at this point in the history

  2. Add docker volume to create directory to store pickled obo files. Adj… 

    …ust startup script to generate obo graph if not found in mounted host directory. Add shell script to build image, make host directory, and run the container.
    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    0cd6d20 View commit details
    Browse the repository at this point in the history

  3. Format file

    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    993b905 View commit details
    Browse the repository at this point in the history

  4. Make adding the graph to docker simpler

    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    4f29d50 View commit details
    Browse the repository at this point in the history

  5. Revert startup.sh script

    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    c2acfe8 View commit details
    Browse the repository at this point in the history

  6. Remove duplicate script

    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    1a6d875 View commit details
    Browse the repository at this point in the history

  7. Use correct pyobo get_version

    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    614bf19 View commit details
    Browse the repository at this point in the history

  8. Removed unused imports

    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    efe1ff6 View commit details
    Browse the repository at this point in the history

  9. Add fallback option to download and convert ncbitaxon obo graph

    @nanglo123
    nanglo123 committed Sep 20, 2024
    Configuration menu
    Copy the full SHA
    9386894 View commit details
    Browse the repository at this point in the history