Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix the epidemology DKG construction pipeline and docker container startup #376

Open
wants to merge 4 commits into
base: main
Choose a base branch
from

Conversation

nanglo123
Copy link
Contributor

This PR fixes a bug where we incorrectly test for Xref objects from the mira.dkg.models module instead of Xref objects from the bioontologies.obograph module in the DKG construction pipeline. We also remove resources that do not contain any graph data and remove duplicate xref edges.

We now test to see if white spaced stripped gilda normalized text evaluates to a truthy value before creating a corresponding gilda term as opposed to regular gilda normalized text. The reason for this is that some non-english characters when grounded, return a string with only spaces which would cause the docker container to crash

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant