Adds missing ENDMDL on HETATM in pdb_tidy
#62
Workflow file for this run
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| --- | |
| name: build_and_test | |
| on: # yamllint disable-line rule:truthy | |
| pull_request: | |
| branches: | |
| - master | |
| push: | |
| branches: | |
| - master | |
| jobs: | |
| # Only lint in one platform to save compute time | |
| linter: | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest] | |
| python-version: ["3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| shell: bash | |
| - name: Linter | |
| run: | | |
| python -m pip install flake8 | |
| flake8 . | |
| build_and_test: | |
| name: Build & Test | |
| runs-on: ${{ matrix.platform }} | |
| needs: [linter] | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: [2.7, 3.7, 3.8, 3.9, "3.10"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade bump2version twine | |
| python -m pip install --upgrade coverage | |
| - name: Build | |
| run: | | |
| python --version | |
| python setup.py sdist bdist_wheel | |
| twine check dist/*.whl | |
| twine check dist/*.tar.gz | |
| bump2version --dry-run --verbose --allow-dirty patch | |
| bump2version --dry-run --verbose --allow-dirty minor | |
| bump2version --dry-run --verbose --allow-dirty major | |
| - name: Install pdb-tools | |
| run: | | |
| python -m pip install . | |
| - name: Test on Linux | |
| run: | | |
| script -q -e -c "coverage run -p setup.py test" | |
| shell: bash | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Test on MacOS / Windows | |
| run: | | |
| coverage run -p setup.py test | |
| shell: bash | |
| if: matrix.os != 'ubuntu-latest' | |
| env: | |
| SKIP_TTY_TESTS: true | |
| # Store coverage data for later | |
| # https://hynek.me/articles/ditch-codecov-python/ | |
| - name: Store coverage data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-data | |
| path: .coverage.* | |
| if-no-files-found: ignore | |
| retention-days: 2 | |
| # Combine and analyze coverage | |
| # https://hynek.me/articles/ditch-codecov-python/ | |
| coverage: | |
| name: Combine & Check coverage. | |
| runs-on: ubuntu-latest | |
| needs: [build_and_test] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install --upgrade coverage | |
| - name: Download coverage data. | |
| uses: actions/download-artifact@v2 | |
| with: | |
| name: coverage-data | |
| # We should update the threshold as we write more tests. | |
| # It should be the minimum we are comfortable with. | |
| - name: Combine coverage & fail if it's < threshold %. | |
| run: | | |
| python -m coverage combine | |
| python -m coverage html --skip-covered --skip-empty | |
| python -m coverage report --fail-under=80 | |
| - name: Upload HTML report if check failed. | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: html-report | |
| path: htmlcov | |
| if: ${{ failure() }} |