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Improve pdb_merge to include TERs and END lines #150

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Improve pdb_merge to include TERs and END lines #150

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df967d6
add END line to the end of merge
joaomcteixeira Nov 3, 2022
0ede978
some draft
joaomcteixeira Apr 3, 2023
6661ed4
add test pdbs
joaomcteixeira Apr 5, 2023
822ce2b
new draft
joaomcteixeira Apr 5, 2023
4e636c6
almost finalized draft
joaomcteixeira Apr 6, 2023
82ef8ce
release candidate
joaomcteixeira Apr 11, 2023
67e5c8c
Merge branch 'master' into i149
joaomcteixeira Apr 11, 2023
0a7db3d
lint
joaomcteixeira Apr 11, 2023
6056b50
compatibility with 2.7
joaomcteixeira Apr 11, 2023
da69f86
address OSes linesep
joaomcteixeira Apr 11, 2023
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1 change: 1 addition & 0 deletions pdbtools/pdb_merge.py
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Original file line number Diff line number Diff line change
Expand Up @@ -85,6 +85,7 @@ def run(flist):
for line in fhandle:
yield line
fhandle.close()
yield 'END\n'


concatenate_files = run
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2 changes: 1 addition & 1 deletion tests/test_pdb_merge.py
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Original file line number Diff line number Diff line change
Expand Up @@ -65,7 +65,7 @@ def test_default(self):

# Validate results
self.assertEqual(self.retcode, 0) # ensure the program exited OK.
self.assertEqual(len(self.stdout), 408) # no lines deleted
self.assertEqual(len(self.stdout), 409) # no lines deleted
self.assertEqual(len(self.stderr), 0) # no errors

def test_file_not_found(self):
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